Co-orthologous gene (inparalogue, also called lineage-specific expansion of paralogous families)

Parasitology ◽  
2017 ◽  
Vol 144 (10) ◽  
pp. 1316-1327 ◽  
Author(s):  
SEON-HEE KIM ◽  
YOUNG-AN BAE

SUMMARYTyrosinase provides an essential activity during egg production in diverse platyhelminths by mediating sclerotization of eggshells. In this study, we investigated the genomic and evolutionary features of tyrosinases in parasitic platyhelminths whose genomic information is available. A pair of paralogous tyrosinases was detected in most trematodes, whereas they were lost in cyclophyllidean cestodes. A pseudophyllidean cestode displaying egg biology similar to that of trematodes possessed an orthologous gene. Interestingly, one of the paralogous tyrosinases appeared to have been multiplied into three copies in Clonorchis sinensis and Opisthorchis viverrini. In addition, a fifth tyrosinase gene that was minimally transcribed through all developmental stages was further detected in these opisthorchiid genomes. Phylogenetic analyses demonstrated that the tyrosinase gene has undergone duplication at least three times in platyhelminths. The additional opisthorchiid gene arose from the first duplication. A paralogous copy generated from these gene duplications, except for the last one, seemed to be lost in the major neodermatans lineages. In C. sinensis, tyrosinase gene expressions were initiated following sexual maturation and the levels were significantly enhanced by the presence of O2 and bile. Taken together, our data suggest that tyrosinase has evolved lineage-specifically across platyhelminths related to its copy number and induction mechanism.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Leonid L. Moroz ◽  
Daria Y. Romanova ◽  
Mikhail A. Nikitin ◽  
Dosung Sohn ◽  
Andrea B. Kohn ◽  
...  

2007 ◽  
Vol 24 (9) ◽  
pp. 1934-1943 ◽  
Author(s):  
Ho-Ryun Chung ◽  
Ulrike Löhr ◽  
Herbert Jäckle

2010 ◽  
Vol 26 (9) ◽  
pp. 388-393 ◽  
Author(s):  
Varodom Charoensawan ◽  
Derek Wilson ◽  
Sarah A. Teichmann

Genetics ◽  
2013 ◽  
Vol 196 (2) ◽  
pp. 481-496 ◽  
Author(s):  
Vallari Shukla ◽  
Farhat Habib ◽  
Apurv Kulkarni ◽  
Girish S. Ratnaparkhi

2016 ◽  
Vol 2016 ◽  
pp. 1-13 ◽  
Author(s):  
Samiksha Wasnik ◽  
Suma Kantipudi ◽  
Mark A. Kirkland ◽  
Gopal Pande

The extracellular microenvironment in bone marrow (BM) is known to regulate the growth and differentiation of hematopoietic stem and progenitor cells (HSPC). We have developed cell-free matrices from a BM stromal cell line (HS-5), which can be used as substrates either in native form or as tissue engineered coatings, for the enhancedex vivoexpansion of umbilical cord blood (UCB) derived HSPC. The physicochemical properties (surface roughness, thickness, and uniformity) of native and spin coated acellular matrices (ACM) were studied using scanning and atomic force microscopy (SEM and AFM). Lineage-specific expansion of HSPC, grown on these substrates, was evaluated by immunophenotypic (flow cytometry) and functional (colony forming) assays. Our results show that the most efficient expansion of lineage-specific HSPC occurred on spin coated ACM. Our method provides an improved protocol forex vivoHSPC expansion and it offers a system to study thein vivoroles of specific molecules in the hematopoietic niche that influence HSPC expansion.


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