scholarly journals Cooperation between a T domain and a minimal C‐terminal docking domain to enable specific assembly in a multiprotein NRPS

2021 ◽  
Author(s):  
Jonas Watzel ◽  
Elke Duchardt-Ferner ◽  
Sepas Sarawi ◽  
Helge B Bode ◽  
Jens Wöhnert
Keyword(s):  
2009 ◽  
Vol 96 (3) ◽  
pp. 433a
Author(s):  
Alexander Kyrychenko ◽  
Mykola V. Rodnin ◽  
Yevgen O. Posokhov ◽  
Alexey S. Ladokhin

2018 ◽  
Vol 475 (23) ◽  
pp. 3903-3915 ◽  
Author(s):  
William A. Cramer ◽  
Onkar Sharma ◽  
S.D. Zakharov

Current problems in the understanding of colicin import across the Escherichia coli outer membrane (OM), involving a range of cytotoxic mechanisms, are discussed: (I) Crystal structure analysis of colicin E3 (RNAase) with bound OM vitamin B12 receptor, BtuB, and of the N-terminal translocation (T) domain of E3 and E9 (DNAase) inserted into the OM OmpF porin, provide details of the initial interaction of the colicin central receptor (R)- and N-terminal T-domain with OM receptors/translocators. (II) Features of the translocon include: (a) high-affinity (Kd ≈ 10−9 M) binding of the E3 receptor-binding R-domain E3 to BtuB; (b) insertion of disordered colicin N-terminal domain into the OmpF trimer; (c) binding of the N-terminus, documented for colicin E9, to the TolB protein on the periplasmic side of OmpF. Reinsertion of the colicin N-terminus into the second of the three pores in OmpF implies a colicin anchor site on the periplasmic side of OmpF. (III) Studies on the insertion of nuclease colicins into the cytoplasmic compartment imply that translocation proceeds via the C-terminal catalytic domain, proposed here to insert through the unoccupied third pore of the OmpF trimer, consistent with in vitro occlusion of OmpF channels by the isolated E3 C-terminal domain. (IV) Discussion of channel-forming colicins focuses mainly on colicin E1 for which BtuB is receptor and the OM TolC protein the proposed translocator. The ability of TolC, part of a multidrug efflux pump, for which there is no precedent for an import function, to provide a trans-periplasmic import pathway for colicin E1, is questioned on the basis of an unfavorable hairpin conformation of colicin N-terminal peptides inserted into TolC.


Science ◽  
1996 ◽  
Vol 273 (5276) ◽  
pp. 810-812 ◽  
Author(s):  
K. J. Oh ◽  
H. Zhan ◽  
C. Cui ◽  
K. Hideg ◽  
R. J. Collier ◽  
...  

2005 ◽  
Vol 8 (4) ◽  
pp. 599-610 ◽  
Author(s):  
Nigel J. Messenger ◽  
Christin Kabitschke ◽  
Robert Andrews ◽  
Donna Grimmer ◽  
Ricardo Núñez Miguel ◽  
...  

This volume brings together the latest diachronic research on syntactic features and their role in restricting syntactic change. The chapters address a central theoretical issue in diachronic syntax: whether syntactic variation can always be attributed to differences in the features of items in the lexicon, as the Borer-Chomsky conjecture proposes. In answering this question, all the chapters develop analyses of syntactic change couched within a formalist framework in which rich hierarchical structures and abstract features of various kinds play an important role. The first three parts of the volume explore the different domains of the clause, namely the C-domain, the T-domain and the ν‎P/VP-domain respectively, while chapters in the final part are concerned with establishing methodology in diachronic syntax and modelling linguistic correspondences. The contributors draw on extensive data from a large number of languages and dialects, including several that have received little attention in the literature on diachronic syntax, such as Romeyka, a Greek variety spoken in Turkey, and Middle Low German, previously spoken in northern Germany. Other languages are explored from a fresh theoretical perspective, including Hungarian, Icelandic, and Austronesian languages. The volume sheds light not only on specific syntactic changes from a cross-linguistic perspective but also on broader issues in language change and linguistic theory.


2002 ◽  
Vol 34 (3) ◽  
pp. 365-384 ◽  
Author(s):  
A. DeBenedictis ◽  
D. Aruliah ◽  
A. Das

1991 ◽  
Vol 274 (1) ◽  
pp. 293-296 ◽  
Author(s):  
J K Sheehan ◽  
R P Boot-Handford ◽  
E Chantler ◽  
I Carlstedt ◽  
D J Thornton

Polyclonal antibodies were raised in rabbits towards reduced subunits of human cervical mucus glycoproteins. The reduced subunits almost completely inhibited the antiserum, whereas the intact mucins and the heavily glycosylated fragments obtained after digestion of reduced subunits with trypsin (T-domains) caused only partial inhibition. Periodate oxidation of intact mucins, reduced subunits and T-domains caused no effect on the antibody response, and fragments obtained by more extensive proteolysis of the reduced subunits (P-domains) showed no inhibitory activity. By using electron microscopy, antibodies from T-domain-adsorbed antisera were revealed as bound to cervical mucin reduced subunits, either directly or with colloidal gold-Protein A. Binding sites (100-150 nm apart) were observed at the ends and at internal positions of the reduced subunits. We conclude that the antibodies do not recognize carbohydrate structures but are directed to two kinds of protein epitopes, one shared by whole mucins, reduced subunits and T-domains, and the other specific to the reduced subunit fragment. The latter epitopes are ‘cryptic’ and are probably shielded within folded protein domains stabilized by disulphide bonds. Human bronchial, cervical, gastric and salivary mucus glycoproteins share some of these cryptic epitopes.


2017 ◽  
Vol 112 (3) ◽  
pp. 184a
Author(s):  
Mykola V. Rodnin ◽  
Jing Li ◽  
Michael L. Gross ◽  
Alexey S. Ladokhin

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