Effects of Arginine Deimination and Citrulline Side‐Chain Length on Peptide Secondary Structure Formation

ChemBioChem ◽  
2019 ◽  
Vol 20 (16) ◽  
pp. 2118-2124
Author(s):  
Po‐Yi Wu ◽  
Chin‐Yi Chen ◽  
Jhe‐Hao Li ◽  
Jin‐Kai Lin ◽  
Ting‐Hsuan Chen ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Structure Formation ◽  
Chain Length ◽  
Side Chain ◽  
Side Chain Length ◽  
Secondary Structure Formation ◽  
Peptide Secondary Structure

Main-chain chiral poly(2-oxazoline)s: Influence of alkyl side-chain on secondary structure formation in solution

2011 ◽  
Vol 49 (13) ◽  
pp. 2790-2801 ◽  
Author(s):  
Meta M. Bloksma ◽  
Sarah Rogers ◽  
Ulrich S. Schubert ◽  
Richard Hoogenboom
Keyword(s):  
Secondary Structure ◽  
Structure Formation ◽  
Main Chain ◽  
Side Chain ◽  
Alkyl Side Chain ◽  
Secondary Structure Formation

scholarly journals Main-Chain Chiral Poly(2-oxazoline)s: Influence of Alkyl Side-Chain on Secondary Structure Formation in the Solid State

2015 ◽  
Vol 350 (1) ◽  
pp. 43-54 ◽  
Author(s):  
Meta M. Bloksma ◽  
Marco M. R. M. Hendrix ◽  
Silke Rathgeber ◽  
Ulrich S. Schubert ◽  
Richard Hoogenboom
Keyword(s):  
Solid State ◽  
Secondary Structure ◽  
Structure Formation ◽  
Main Chain ◽  
Side Chain ◽  
Alkyl Side Chain ◽  
Secondary Structure Formation

Effect of Hexafluoroisopropanol on the Thermodynamics of Peptide Secondary Structure Formation

1999 ◽  
Vol 121 (42) ◽  
pp. 9879-9880 ◽  
Author(s):  
Niels H. Andersen ◽  
R. Brian Dyer ◽  
R. Matthew Fesinmeyer ◽  
Feng Gai ◽  
Zhihong Liu ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Structure Formation ◽  
Secondary Structure Formation ◽  
Peptide Secondary Structure

scholarly journals Effects of Amino Acid Side-Chain Length and Chemical Structure on Anionic Polyglutamic and Polyaspartic Acid Cellulose-Based Polyelectrolyte Brushes

Polymers ◽  
2021 ◽  
Vol 13 (11) ◽  
pp. 1789
Author(s):  
Dmitry Tolmachev ◽  
George Mamistvalov ◽  
Natalia Lukasheva ◽  
Sergey Larin ◽  
Mikko Karttunen
Keyword(s):  
Glutamic Acid ◽  
Chain Length ◽  
Chemical Structure ◽  
Side Chain ◽  
Side Chains ◽  
Side Chain Length ◽  
Polyelectrolyte Brushes ◽  
Grafting Density ◽  
The Difference ◽  
Cellulose Surface

We used atomistic molecular dynamics (MD) simulations to study polyelectrolyte brushes based on anionic α,L-glutamic acid and α,L-aspartic acid grafted on cellulose in the presence of divalent CaCl2 salt at different concentrations. The motivation is to search for ways to control properties such as sorption capacity and the structural response of the brush to multivalent salts. For this detailed understanding of the role of side-chain length, the chemical structure and their interplay are required. It was found that in the case of glutamic acid oligomers, the longer side chains facilitate attractive interactions with the cellulose surface, which forces the grafted chains to lie down on the surface. The additional methylene group in the side chain enables side-chain rotation, enhancing this effect. On the other hand, the shorter and more restricted side chains of aspartic acid oligomers prevent attractive interactions to a large degree and push the grafted chains away from the surface. The difference in side-chain length also leads to differences in other properties of the brush in divalent salt solutions. At a low grafting density, the longer side chains of glutamic acid allow the adsorbed cations to be spatially distributed inside the brush resulting in a charge inversion. With an increase in grafting density, the difference in the total charge of the aspartic and glutamine brushes disappears, but new structural features appear. The longer sides allow for ion bridging between the grafted chains and the cellulose surface without a significant change in main-chain conformation. This leads to the brush structure being less sensitive to changes in salt concentration.

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