DNA Adduct Detection after Post‐Labeling Technique with PCR Amplification (DNA‐ADAPT–qPCR) Identifies the Pre‐Ribosomal RNA Gene as a Direct Target of Platinum–Acridine Anticancer Agents

Author(s):  
Xiyuan Yao ◽  
Ulrich Bierbach
1999 ◽  
Vol 122 (2) ◽  
pp. 323-328 ◽  
Author(s):  
M. T. E. P. ALLSOPP ◽  
C. M. HATTINGH ◽  
S. W. VOGEL ◽  
B. A. ALLSOPP

A panel of 16S ribosomal RNA gene probes has been developed for the study of the epidemiology of heartwater; five of these detect different cowdria genotypes, one detects five distinct genotypes; one detects any Group III Ehrlichia species other than Cowdria and one detects any Group II Ehrlichia species. These probes have been used on PCR-amplified rickettsial 16S rRNA genes from over 200 Amblyomma hebraeum ticks. Control ticks were laboratory-reared and either uninfected or fed on sheep experimentally infected with different cowdria isolates, field ticks were collected from animals in heartwater-endemic areas. All tick-derived DNA samples were also examined by PCR amplification and probing for two other cowdria genes (map1 and pCS20) which have previously been used for heartwater epidemiology. This paper describes the first direct comparison of all currently available DNA probes for heartwater-associated organisms.


Parasitology ◽  
2000 ◽  
Vol 121 (5) ◽  
pp. 555-563 ◽  
Author(s):  
C. M. COLLINS ◽  
C. O. CUNNINGHAM

The intergenic spacer of the ribosomal RNA gene array from the monogenean Gyrodactylus salaris was isolated using PCR amplification. PCR products were cloned and sequenced. Three different fragments of 0·63, 1·0 and 2·62 kb, were consistently obtained. These showed homology at the 5′ and 3′ termini but differed in their overall size and intervening sequence. The 5′ end showed homology to various 28S ribosomal RNA gene sequences, suggesting that this represented the 3′ terminus of the G. salaris 28S ribosomal RNA gene. A number of features common to other eukaryotic intergenic spacers were found in the longest sequence, including A + T rich sequences, palindromic sequences and tandemly repeated elements. Two regions of 23 bp sequences arranged in non-identical tandem repeats were identified. There were 9 repeats in both regions, separated by 81 bp of non-repetitive sequence. The repeat units from the two regions shared some similarity at their 3′ ends. The G. salaris intergenic spacer sequence was examined for sequence motifs involved in the transcription of the ribosomal RNA genes in other species. Several regions with homology to transcription start sites were identified.


Plant Disease ◽  
2021 ◽  
Author(s):  
Ying Wei Khoo ◽  
Tan Hui Teng ◽  
Yam Sim Khaw ◽  
Shifang Li ◽  
Khim Phin Chong

Canna indica L. (family Cannaceae), locally known as Bunga Kana, is a perennial plant grown as a source of starch and for ornamental purposes in Malaysia. During June 2021, Bunga Kana with rust symptoms and signs were collected from the Universiti Malaysia Sabah in the province of Sabah. The severity was 95%, and the incidence was 90%. Yellow uredinia were observed primarily on the abaxial surface of the leaves. As the disease progressed, leaves were covered with coalescing pustules, and chlorosis and brown necrosis developed. Microscopic examination of pustules revealed the presence of urediniospores and teliospores. Urediniospores were round to ovoid in shape, yellow, and echinulate, 17.7 to 24.6 x 26.8 to 45.2 μm, with two equatorial pores. Teliospores were elongate-clavate, with rounded apex, yellow contents, 18.3 x 20.2 to 45.8 x 53.9 μm, with a short pedicel. Yellow urediniospores were collected using a fine brush, and genomic DNA was extracted using lysis buffer [Tris-HCl (0.1M, pH 9.5), NaCl (1M), EDTA (0.5M, pH 8)] prior to heating at 95°C for 10 min. KOD One PCR master mix containing hot-start modified KOD DNA polymerase was used for PCR amplification. The 28S ribosomal RNA gene was amplified using primers Rust28SF (Aime et al. 2018) and LR5 (Vilgalys and Hester 1990). BLASTn analysis of the newly generated 28S ribosomal RNA gene (OK462969) in GenBank revealed a 99% sequence identity to Puccinia thaliae Dietel (JX206994 of 28S ribosomal RNA gene). The morphological and molecular characterization of the rust fungus matched P. thaliae described by Padamsee and McKenzie (2012). Koch's postulates were performed with spray inoculations of urediniospores suspended in water (106 spores/ml) on leaves of three healthy Bunga Kana plants, while water was sprayed on three additional Bunga Kana plants which served as control. The inoculated Bunga Kana plants were covered with plastics for 48 h at 25°C in the dark, and then placed in the greenhouse. Symptoms and signs similar to those of the field collection occurred after 13 days post inoculation. No symptoms occurred on controls. Leaf rust on Bunga Kana plants caused by P. thaliae has been reported in Europe (Talhinhas et al. 2016), Hawaii (Nelson 2013), India (Gopi et al. 2014), Mexico (Cedas de Jesús et al. 2018), Nepal (Adhikari and Durrieu 2016), New Zealand (Padamsee and McKenzie 2012), Singapore (Neo and Tham 2010) and South Africa (van Jaarsveld et al. 2006) over the past fifteen years. To our knowledge, this is the first report of P. thaliae causing leaf rust on C. indica in Malaysia. Our findings expand the geographic range of P. thaliae and indicate it could be a potential threat limiting the starch production of C. indica in Malaysia.


Genetics ◽  
1989 ◽  
Vol 122 (3) ◽  
pp. 617-624 ◽  
Author(s):  
S M Williams ◽  
J A Kennison ◽  
L G Robbins ◽  
C Strobeck

Abstract The role of reciprocal recombination in the coevolution of the ribosomal RNA gene family on the X and Y chromosomes of Drosophila melanogaster was assessed by determining the frequency and nature of such exchange. In order to detect exchange events within the ribosomal RNA gene family, both flanking markers and restriction fragment length polymorphisms within the tandemly repeated gene family were used. The vast majority of crossovers between flanking markers were within the ribosomal RNA gene region, indicating that this region is a hotspot for heterochromatic recombination. The frequency of crossovers within the ribosomal RNA gene region was approximately 10(-4) in both X/X and X/Y individuals. In conjunction with published X chromosome-specific and Y chromosome-specific sequences and restriction patterns, the data indicate that reciprocal recombination alone cannot be responsible for the observed variation in natural populations.


Sign in / Sign up

Export Citation Format

Share Document