scholarly journals Reciprocal recombination and the evolution of the ribosomal gene family of Drosophila melanogaster.

Genetics ◽  
1989 ◽  
Vol 122 (3) ◽  
pp. 617-624 ◽  
Author(s):  
S M Williams ◽  
J A Kennison ◽  
L G Robbins ◽  
C Strobeck
Keyword(s):  
Drosophila Melanogaster ◽  
Gene Family ◽  
Ribosomal Rna ◽  
Natural Populations ◽  
Ribosomal Gene ◽  
Gene Region ◽  
Ribosomal Rna Gene ◽  
Reciprocal Recombination ◽  
Y Chromosomes ◽  
Length Polymorphisms

Abstract The role of reciprocal recombination in the coevolution of the ribosomal RNA gene family on the X and Y chromosomes of Drosophila melanogaster was assessed by determining the frequency and nature of such exchange. In order to detect exchange events within the ribosomal RNA gene family, both flanking markers and restriction fragment length polymorphisms within the tandemly repeated gene family were used. The vast majority of crossovers between flanking markers were within the ribosomal RNA gene region, indicating that this region is a hotspot for heterochromatic recombination. The frequency of crossovers within the ribosomal RNA gene region was approximately 10(-4) in both X/X and X/Y individuals. In conjunction with published X chromosome-specific and Y chromosome-specific sequences and restriction patterns, the data indicate that reciprocal recombination alone cannot be responsible for the observed variation in natural populations.

Multigene Family of Ribosomal DNA in Drosophila melanogaster Reveals Contrasting Patterns of Homogenization for IGS and ITS Spacer Regions: A Possible Mechanism to Resolve This Paradox

Genetics ◽  
1998 ◽  
Vol 149 (1) ◽  
pp. 243-256 ◽  
Author(s):  
Carlos Polanco ◽  
Ana I González ◽  
Álvaro de la Fuente ◽  
Gabriel A Dover
Keyword(s):  
Drosophila Melanogaster ◽  
Concerted Evolution ◽  
Multigene Family ◽  
Natural Populations ◽  
Intergenic Spacer ◽  
Meiotic Pairing ◽  
Y Chromosomes ◽  
Mutation Distribution ◽  
Chromosome Exchanges

Abstract The multigene family of rDNA in Drosophila reveals high levels of within-species homogeneity and between-species diversity. This pattern of mutation distribution is known as concerted evolution and is considered to be due to a variety of genomic mechanisms of turnover (e.g., unequal crossing over and gene conversion) that underpin the process of molecular drive. The dynamics of spread of mutant repeats through a gene family, and ultimately through a sexual population, depends on the differences in rates of turnover within and between chromosomes. Our extensive molecular analysis of the intergenic spacer (IGS) and internal transcribed spacer (ITS) spacer regions within repetitive rDNA units, drawn from the same individuals in 10 natural populations of Drosophila melanogaster collected along a latitudinal cline on the east coast of Australia, indicates a relatively fast rate of X-Y and X-X interchromosomal exchanges of IGS length variants in agreement with a multilineage model of homogenization. In contrast, an X chromosome-restricted 24-bp deletion in the ITS spacers is indicative of the absence of X-Y chromosome exchanges for this region that is part of the same repetitive rDNA units. Hence, a single lineage model of homogenization, coupled to drift and/or selection, seems to be responsible for ITS concerted evolution. A single-stranded exchange mechanism is proposed to resolve this paradox, based on the role of the IGS region in meiotic pairing between X and Y chromosomes in D. melanogaster.

Phylogenetic analysis of the small subunit ribosomal RNA gene of the hyphochytrid Rhizidiomyces apophysatus

2000 ◽  
Vol 78 (1) ◽  
pp. 124-128 ◽  
Author(s):  
Georg Hausner ◽  
Abbes Belkhiri ◽  
Glen R Klassen
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Rna ◽  
Small Subunit ◽  
Ribosomal Gene ◽  
Ribosomal Rna Gene ◽  
Rna Sequence ◽  
Small Subunit Ribosomal Rna ◽  
Potential Relationship ◽  
Relationship Of

The potential relationship of the uniflagellate hyphochytrids with biflagellate stramenopiles is still not clearly resolved. Thus, we have expanded the number of isolates and taxa of hyphochytrids compared. The phylogenetic analysis of the small subunit ribosomal RNA sequence of Rhizidiomyces apophysatus Zopf based on neighbour-joining and parsimony methods showed that Hyphochytrium catenoides Karling and R. apophysatus are monophyletic and probably the closest relatives of the oomycetes. Our data also confirmed the monophyly of the stramenopiles, which includes heterokont algae along with nonphotosynthetic fungallike organisms, namely the Oomycota, Hyphochytriomycota, and Labyrinthulomycota.Key words: Hyphochytriomycota, heterokont algae, phylogeny, small subunit ribosomal gene.

scholarly journals Variation in Y Chromosome Segregation in Natural Populations of Drosophila melanogaster

Genetics ◽  
1987 ◽  
Vol 115 (1) ◽  
pp. 143-151
Author(s):  
Andrew G Clark
Keyword(s):  
Drosophila Melanogaster ◽  
Y Chromosome ◽  
Chromosome Segregation ◽  
Significant Variation ◽  
Natural Populations ◽  
Meiotic Drive ◽  
Adult Offspring ◽  
Functional Variation ◽  
Y Chromosomes ◽  
Geographic Origins

ABSTRACT Functional variation among Y chromosomes in natural populations of Drosophila melanogaster was assayed by a segregation study. A total of 36 Y chromosomes was extracted and ten generations of replacement backcrossing yielded stocks with Y chromosomes in two different genetic backgrounds. Eleven of the Y chromosomes were from diverse geographic origins, and the remaining 25 were from locally captured flies. Segregation of sexes in adult offspring was scored for the four possible crosses among the two backgrounds with each Y chromosome. Although the design confounds meiotic drive and effects on viability, statistical partitioning of these effects reveals significant variation among lines in Y chromosome segregation. Results are discussed in regards to models of Y-linked segregation and viability effects, which suggest that Y-linked adaptive polymorphism is unlikely.

scholarly journals Bipartite structure of the 5S ribosomal gene family in a Drosophila melanogaster strain, and its evolutionary implications.

Genetics ◽  
1988 ◽  
Vol 118 (4) ◽  
pp. 685-691
Author(s):  
M L Samson ◽  
M Wegnez
Keyword(s):  
Drosophila Melanogaster ◽  
Gene Family ◽  
Restriction Site ◽  
Ribosomal Gene ◽  
Point Of View ◽  
Mixed Cluster ◽  
Hindiii Restriction Site ◽  
Multigenic Family ◽  
Evolutionary Point ◽  
Insight Into

Abstract Knowledge of multigenic family organization should provide insight into their mode of evolution. Accordingly, we characterized the 5S ribosomal gene family in the Drosophila melanogaster strain ry506. The 5S genes in this strain display a striking HindIII restriction difference compared to the "standard" D. melanogaster 5S genes. The sequence of three ry506 5S genes was determined. We show that the HindIII restriction site heterogeneity within the ry506 5S family most probably results from the same point mutation, suggesting that a single 5S variant was propagated into the 5S cluster of this strain. Furthermore, we demonstrate that the structural organization of the 5S genes in ry506 is a bipartite structure, i.e., that about 40% of the 5S genes constitute a HindIII+/HindIII- mixed cluster, while those remaining constitute an homogeneous HindIII- cluster. The events which might lead to such an heterogeneous pattern are discussed from an evolutionary point of view.

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