VAMP-1 Has a Highly Variable C-Terminus Generated by Alternative Splicing

1999 ◽  
Vol 264 (3) ◽  
pp. 777-780 ◽  
Author(s):  
Lars Berglund ◽  
Hans Jürgen Hoffmann ◽  
Ronald Dahl ◽  
Torben Ellebæk Petersen
Biochemistry ◽  
2001 ◽  
Vol 40 (10) ◽  
pp. 3189-3195 ◽  
Author(s):  
Bing-Mei Zhang ◽  
Vipin Kohli ◽  
Roberto Adachi ◽  
José A. López ◽  
Mark M. Udden ◽  
...  

2002 ◽  
Vol 22 (22) ◽  
pp. 7731-7743 ◽  
Author(s):  
Madeleine Toutant ◽  
Alicia Costa ◽  
Jeanne-Marie Studler ◽  
Gress Kadaré ◽  
Michèle Carnaud ◽  
...  

ABSTRACT Focal adhesion kinase (FAK) is activated following integrin engagement or stimulation of transmembrane receptors. Autophosphorylation of FAK on Tyr-397 is a critical event, allowing binding of Src family kinases and activation of signal transduction pathways. Tissue-specific alternative splicing generates several isoforms of FAK with different autophosphorylation rates. Despite its importance, the mechanisms of FAK autophosphorylation and the basis for differences between isoforms are not known. We addressed these questions using isoforms of FAK expressed in brain. Autophosphorylation of FAK+, which is identical to that of “standard” FAK, was intermolecular in transfected cells, although it did not involve the formation of stable multimeric complexes. Coumermycin-induced dimerization of gyrase B-FAK+ chimeras triggered autophosphorylation of Tyr-397. This was independent of cell adhesion but required the C terminus of the protein. In contrast, the elevated autophosphorylation of FAK+6,7, the major neuronal splice isoform, was not accounted for by transphosphorylation. Specifically designed immune precipitate kinase assays confirmed that autophosphorylation of FAK+ was intermolecular, whereas autophosphorylation of FAK+6,7 or FAK+7 was predominantly intramolecular and insensitive to the inhibitory effects of the N-terminal domain. Our results clarify the mechanisms of FAK activation and show how alternative splicing can dramatically alter the mechanism of autophosphorylation of a protein kinase.


2006 ◽  
Vol 576 (1) ◽  
pp. 119-134 ◽  
Author(s):  
Andrew J. Castiglioni ◽  
Jesica Raingo ◽  
Diane Lipscombe

2015 ◽  
Vol 90 (4) ◽  
pp. 2039-2051
Author(s):  
Céline Lété ◽  
Nicolas Markine-Goriaynoff ◽  
Bénédicte Machiels ◽  
Poh-Choo Pang ◽  
Xue Xiao ◽  
...  

ABSTRACTCarbohydrates play major roles in host-virus interactions. It is therefore not surprising that, during coevolution with their hosts, viruses have developed sophisticated mechanisms to hijack for their profit different pathways of glycan synthesis. Thus, the Bo17 gene of Bovine herpesvirus 4 (BoHV-4) encodes a homologue of the cellular core 2 protein β-1,6-N-acetylglucosaminyltransferase-mucin type (C2GnT-M), which is a key player for the synthesis of complexO-glycans. Surprisingly, we show in this study that, as opposed to what is observed for the cellular enzyme, two different mRNAs are encoded by the Bo17 gene of all available BoHV-4 strains. While the first one corresponds to the entire coding sequence of the Bo17 gene, the second results from the splicing of a 138-bp intron encoding critical residues of the enzyme. Antibodies generated against the Bo17 C terminus showed that the two forms of Bo17 are expressed in BoHV-4 infected cells, but enzymatic assays revealed that the spliced form is not active. In order to reveal the function of these two forms, we then generated recombinant strains expressing only the long or the short form of Bo17. Although we did not highlight replication differences between these strains, glycomic analyses and lectin neutralization assays confirmed that the splicing of the Bo17 gene gives the potential to BoHV-4 to fine-tune the global level of core 2 branching activity in the infected cell. Altogether, these results suggest the existence of new mechanisms to regulate the activity of glycosyltransferases from the Golgi apparatus.IMPORTANCEViruses are masters of adaptation that hijack cellular pathways to allow their growth. Glycans play a central role in many biological processes, and several studies have highlighted mechanisms by which viruses can affect glycosylation. Glycan synthesis is a nontemplate process regulated by the availability of key glycosyltransferases. Interestingly, bovine herpesvirus 4 encodes one such enzyme which is a key enzyme for the synthesis of complexO-glycans. In this study, we show that, in contrast to cellular homologues, this virus has evolved to alternatively express two proteins from this gene. While the first one is enzymatically active, the second results from the alternative splicing of the region encoding the catalytic site of the enzyme. We postulate that this regulatory mechanism could allow the virus to modulate the synthesis of some particular glycans for function at the location and/or the moment of infection.


2018 ◽  
Vol 10 (8) ◽  
pp. 56
Author(s):  
Goitseone Malambane ◽  
Hisashi Tsujimoto ◽  
Kinya Akashi

Ascorbate peroxidase (APX) plays an important role in detoxifying reactive oxygen species under environmental stress. Although previous work in drought-tolerant wild watermelon has shown an increase in chloroplast APX enzyme activity under drought, molecular entities of APX have remained uncharacterized. In this study, structure and transcriptional regulation of the APX gene family in watermelon were characterized. Five APX genes, designated as CLAPX1 to CLAPX5, were identified from watermelon genome. The mRNA alternative splicing was suggested for CLAPX5, which generated two distinct deduced amino acid sequences at their C-terminus, in resemblance to a reported alternative splicing of chloroplast APXs in pumpkin. This observation suggests that two isoenzymes for stromal and thylakoid-bound APXs may be generated from the CLAPX5 gene. Phylogenetic analysis classified CLAPX isoenzymes into three clades, i.e., chloroplast, microbody, and cytosolic. Physiological analyses of wild watermelon under drought showed a decline in stomatal conductance and CO2 assimilation rate, and a significant increase in the enzyme activities of both chloroplast and cytosolic APXs. Profiles of mRNA abundance during drought were markedly different among CLAPX genes, suggesting distinct transcriptional regulation for the APX isoenzymes. Up-regulation of CLAPX5-I and CLAPX5-II was observed at the early phase of drought stress, which was temporally correlated with the observed increase in chloroplast APX enzyme activity, suggesting that transcriptional up-regulation of the CLAPX5 gene may contribute to the fortification of chloroplast APX activity under drought. Our study has provided an insight into the functional significance of the CLAPX gene family in the drought tolerance mechanism in this plant.


2001 ◽  
Vol 114 (21) ◽  
pp. 3873-3884 ◽  
Author(s):  
Zoe Waibler ◽  
Annette Schäfer ◽  
Anna Starzinski-Powitz

ARVCF, a member of the catenin family, is thought to contribute to the morphoregulatory function of the cadherin-catenin complex. Recently, we reported the isolation and characterisation of murine ARVCF (mARVCF), particularly its interaction with M-cadherin. Here, we describe the identification of novel mARVCF isoforms that arise by alternative splicing. At the N-terminus, alternative splicing results in the inclusion or omission of a coiled-coil region probably important for protein-protein interactions. At the C-terminus, four isoforms also differ by domains potentially important for selective protein-protein interaction. The eight putative mARVCF isoforms were expressed as EGFP-fusion proteins in six different cell lines that exhibit a distinct pattern of cadherins. Apparently, binding of the mARVCF isoforms to M-, N-, or E-cadherin is generally unaffected by their altered N- and C-termini, as revealed by the MOM recruitment assay. However, mARVCF isoforms reproducibly exhibit differential localisation in distinct cellular environments. For example, mARVCF isoforms are unable to colocalise with N-cadherin in EJ28 carcinoma cells but do so in HeLa cells. Our results suggest that the subcellular localisation of mARVCF may be determined not only by the presence or absence of an appropriate interaction partner, in this case cadherins, but also by the cellular context.


1998 ◽  
Vol 18 (7) ◽  
pp. 3889-3899 ◽  
Author(s):  
Matthew E. Harris ◽  
Richard R. Gontarek ◽  
David Derse ◽  
Thomas J. Hope

ABSTRACT The Rev protein of equine infectious anemia virus (ERev) exports unspliced and partially spliced viral RNAs from the nucleus. Like several cellular proteins, ERev regulates its own mRNA by mediating an alternative splicing event. To determine the requirements for these functions, we have identified ERev mutants that affect RNA export or both export and alternative splicing. Mutants were further characterized for subcellular localization, nuclear-cytoplasmic shuttling, and multimerization. None of the nuclear export signal (NES) mutants are defective for alternative splicing. Furthermore, the NES of ERev is similar in composition but distinct in spacing from other leucine-rich NESs. Basic residues at the C terminus of ERev are involved in nuclear localization, and disruption of the C-terminal residues affects both functions of ERev. ERev forms multimers, and no mutation disrupts this activity. In two mutants with substitutions of charged residues in the middle of ERev, RNA export is affected. One of these mutants is also defective for ERev-mediated alternative splicing but is identical to wild-type ERev in its localization, shuttling, and multimerization. Together, these results demonstrate that the two functions of ERev both require nuclear import and at least one other common activity, but RNA export can be separated from alternative splicing based on its requirement for a functional NES.


2009 ◽  
Vol 20 (5) ◽  
pp. 1419-1427 ◽  
Author(s):  
Yoav Biala ◽  
Jana F. Liewald ◽  
Hagit Cohen Ben-Ami ◽  
Alexander Gottschalk ◽  
Millet Treinin

RIC-3 belongs to a conserved family of proteins influencing nicotinic acetylcholine receptor (nAChR) maturation. RIC-3 proteins are integral membrane proteins residing in the endoplasmic reticulum (ER), and containing a C-terminal coiled-coil domain (CC-I). Conservation of CC-I in all RIC-3 family members indicates its importance; however, previous studies could not show its function. To examine the role of CC-I, we studied effects of its deletion on Caenorhabditis elegans nAChRs in vivo. Presence of CC-I promoted maturation of particular nAChRs expressed in body-wall muscle, whereas it was not required for other nAChR subtypes expressed in neurons or pharyngeal muscles. This effect is receptor-specific, because it could be reproduced after heterologous expression. Consistently, coimmunoprecipitation analysis showed that CC-I enhances the interaction of RIC-3 with a nAChR that requires CC-I in vivo; thus CC-I appears to enhance affinity of RIC-3 to specific nAChRs. However, we found that this function of CC-I is redundant with functions of sequences downstream to CC-I, potentially a second coiled-coil. Alternative splicing in both vertebrates and invertebrates generates RIC-3 transcripts that lack the entire C-terminus, or only CC-I. Thus, our results suggest that RIC-3 alternative splicing enables subtype specific regulation of nAChR maturation.


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