A novel view of domain flexibility in E. coli adenylate kinase based on structural mode-coupling 15 N NMR relaxation 1 1Edited by P. E. Wright

2002 ◽  
Vol 315 (2) ◽  
pp. 155-170 ◽  
Author(s):  
Vitali Tugarinov ◽  
Yury E. Shapiro ◽  
Zhichun Liang ◽  
Jack H. Freed ◽  
Eva Meirovitch
2001 ◽  
Vol 123 (13) ◽  
pp. 3055-3063 ◽  
Author(s):  
Vitali Tugarinov ◽  
Zhichun Liang ◽  
Yury E. Shapiro ◽  
Jack H. Freed ◽  
Eva Meirovitch

2021 ◽  
Author(s):  
Mani Sadeghi ◽  
Huan-Min Shang ◽  
Ming-Ta Yang ◽  
Eric Grover

2020 ◽  
Vol 21 (11) ◽  
pp. 4042 ◽  
Author(s):  
Nat Sakol ◽  
Ayako Egawa ◽  
Toshimichi Fujiwara

Aqua Gd3+ and Gd-DOTA (gadolinium-1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacete) complexes were studied as a contrast agent in cellular NMR (nuclear magnetic resonance) spectroscopy for distinguishing between intracellular and extracellular spaces. The contrast agents for this purpose should provide strong paramagnetic relaxation enhancement and localize in the extracellular space without disturbing biological functions. Cell membrane permeability to Gd complexes was evaluated from the concentrations of gadolinium complexes in the inside and outside of E. coli cells measured by the 1H-NMR relaxation. The site-specific binding of the complexes to E. coli cells was also analyzed by high-resolution solid-state 13C-NMR. The aqua Gd3+ complex did not enhance T1 relaxation in proportion to the amount of added Gd3+. This Gd3+ concentration dependence and the 13C-NMR indicated that its strong cytotoxicity should be due to the binding of the paramagnetic ions to cellular components especially at the lipid membranes. In contrast, Gd-DOTA stayed in the solution states and enhanced relaxation in proportion to the added amount. This agent exhibited strong T1 contrast between the intra- and extracellular spaces by a factor of ten at high concentrations under which the cells were viable over a long experimental time of days. These properties make Gd-DOTA suitable for selectively contrasting the living cellular space in NMR spectroscopy primarily owing to its weak interaction with cellular components.


2019 ◽  
Vol 116 (3) ◽  
pp. 162a-163a
Author(s):  
Joseph E. Rehfus ◽  
Vincent J. Hilser

1983 ◽  
Vol 20 (8) ◽  
pp. 696-702 ◽  
Author(s):  
Gerald D. Miller ◽  
John H. Wykes ◽  
Michael J. Brosnan

Author(s):  
Mani Sadeghi ◽  
Ming-Ta Yang ◽  
Huan-Min Shang ◽  
Eric Grover

Abstract The consideration of aeromechanics plays a vital role in the design of machines that operate under aerodynamic forces, such as turbomachinery, and aircraft. The structure of those machines is subject to aeromechanical dynamics, including forced response and flutter. The strength of aeromechanical interaction depends on the level of coupling between flow and structure. One effect that can lead to strong coupling is the interaction between eigenmodes of the structure and eigenmodes of the flow near coincidence. This paper examines the impact of modal coincidence on the linear dynamic stability of aeromechanical systems for two illustrative canonical examples, one governed by inviscid acoustics, and one by the eigenmode of a wake. Three commonly used analysis techniques are applied and ranked for various levels of coupling: The 1-way coupled work-per-cycle method, a 2-way coupled non-linear modal FSI analysis in time, and an eigenanalysis of the 2-way coupled linear system, based on a state-space representation. It is demonstrated that all three methods agree for low to moderate levels of 2-way coupling, typical in turbomachinery applications. At higher levels, the work-per-cycle assessment is insufficient, whereas the FSI and eigenvalue analysis agree well.


2017 ◽  
Vol 139 (32) ◽  
pp. 11233-11240 ◽  
Author(s):  
David Oyen ◽  
R. Bryn Fenwick ◽  
Phillip C. Aoto ◽  
Robyn L. Stanfield ◽  
Ian A. Wilson ◽  
...  

2003 ◽  
Vol 373 (2) ◽  
pp. 515-522 ◽  
Author(s):  
Hélène MUNIER-LEHMANN ◽  
Viviane CHENAL-FRANCISQUE ◽  
Mihaela IONESCU ◽  
Petya CHRISTOVA ◽  
Jeannine FOULON ◽  
...  

Nucleoside monophosphate kinases (NMPKs) are essential catalysts for bacterial growth and multiplication. These enzymes display high primary sequence identities among members of the family Enterobacteriaceae. Yersinia pestis, the causative agent of plague, belongs to this family. However, it was previously shown that its thymidylate kinase (TMPKyp) exhibits biochemical properties significantly different from those of its Escherichia coli counterpart [Chenal-Francisque, Tourneux, Carniel, Christova, Li de la Sierra, Barzu and Gilles (1999) Eur. J. Biochem. 265, 112–119]. In this work, the adenylate kinase (AK) of Y. pestis (AKyp) was characterized. As with TMPKyp, AKyp displayed a lower thermodynamic stability than other studied AKs. Two mutations in AK (Ser129→Phe and Pro87→Ser), previously shown to induce a thermosensitive growth defect in E. coli, were introduced into AKyp. The recombinant variants had a lower stability than wild-type AKyp and a higher susceptibility to proteolytic digestion. When the Pro87→Ser substitution was introduced into the chromosomal adk gene of Y. pestis, growth of the mutant strain was altered at the non-permissive temperature of 37 °C. In virulence testings, less than 50 colony forming units (CFU) of wild-type Y. pestis killed 100% of the mice upon subcutaneous infection, whereas bacterial loads as high as 1.5×104 CFU of the adk mutant were unable to kill any animals.


2015 ◽  
Vol 108 (2) ◽  
pp. 30a
Author(s):  
Jeremy A. Anderson ◽  
Vincent J. Hilser
Keyword(s):  

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