Non-catalytic Regulation of Gene Expression by Aminoacyl-tRNA Synthetases

Author(s):  
Peng Yao ◽  
Kiran Poruri ◽  
Susan A. Martinis ◽  
Paul L. Fox
Life ◽  
2019 ◽  
Vol 9 (3) ◽  
pp. 58 ◽  
Author(s):  
Pol Arranz-Gibert ◽  
Jaymin R. Patel ◽  
Farren J. Isaacs

The genetic code defines how information in the genome is translated into protein. Aside from a handful of isolated exceptions, this code is universal. Researchers have developed techniques to artificially expand the genetic code, repurposing codons and translational machinery to incorporate nonstandard amino acids (nsAAs) into proteins. A key challenge for robust genetic code expansion is orthogonality; the engineered machinery used to introduce nsAAs into proteins must co-exist with native translation and gene expression without cross-reactivity or pleiotropy. The issue of orthogonality manifests at several levels, including those of codons, ribosomes, aminoacyl-tRNA synthetases, tRNAs, and elongation factors. In this concept paper, we describe advances in genome recoding, translational engineering and associated challenges rooted in establishing orthogonality needed to expand the genetic code.


2020 ◽  
Vol 80 (1) ◽  
Author(s):  
Jurica Baranašić ◽  
Anita Mihalak ◽  
Ita Gruić-Sovulj ◽  
Nataša Bauer ◽  
Jasmina Rokov-Plavec

Plants, as sessile organisms, have evolved intricate mechanisms to adapt to various environmental changes and challenges. Considering that various types of stress trigger significant decrease in global translation rates we examined stress-related expression of aminoacyl-tRNA synthetases (aaRSs), enzymes that participate in the first step of protein translation. We have analyzed promoters of genes encoding cytosolic seryl-tRNA synthetase (SerRS), cytosolic aspartyl-tRNA synthetase (AspRS) and cytosolic cysteinyl-tRNA synthetase (CysRS) in Arabidopsis thaliana L., and examined SerRS, AspRS and CysRS gene expression in the seedlings exposed to different abiotic stressors. Although global translation levels are repressed by stress, our results show that plant aaRSs expression is not decreased by osmotic, salt and heavy metal/cadmium stress. Moreover, during exposure to stress conditions we detected increased AspRS and CysRS transcript levels. SerRS gene expression did not change, however participation of SerRS in stress response could be regulated at the protein level. Expression of the examined aaRS genes in stress correlated well with the length of their predicted promoters and a number of available binding sites for the stress related transcription factors. It thus appears that during the stress it is important to keep steady state levels of aaRSs for translation of specific stress related mRNAs and furthermore to rapidly continue with translation when stress conditions cease. Importantly, increased levels of plant aaRSs during stress may serve as a pool of aaRS proteins that can participate directly in stress responses through their noncanonical activities.


2020 ◽  
Vol 477 (16) ◽  
pp. 3091-3104 ◽  
Author(s):  
Luciana E. Giono ◽  
Alberto R. Kornblihtt

Gene expression is an intricately regulated process that is at the basis of cell differentiation, the maintenance of cell identity and the cellular responses to environmental changes. Alternative splicing, the process by which multiple functionally distinct transcripts are generated from a single gene, is one of the main mechanisms that contribute to expand the coding capacity of genomes and help explain the level of complexity achieved by higher organisms. Eukaryotic transcription is subject to multiple layers of regulation both intrinsic — such as promoter structure — and dynamic, allowing the cell to respond to internal and external signals. Similarly, alternative splicing choices are affected by all of these aspects, mainly through the regulation of transcription elongation, making it a regulatory knob on a par with the regulation of gene expression levels. This review aims to recapitulate some of the history and stepping-stones that led to the paradigms held today about transcription and splicing regulation, with major focus on transcription elongation and its effect on alternative splicing.


2006 ◽  
Vol 114 (S 1) ◽  
Author(s):  
JM Weitzel ◽  
A Wulf ◽  
M Rajkovic ◽  
HJ Seitz

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