The Unfolding of a Catalytic Mechanism for the Remarkable ATP Synthase

Author(s):  
Teri Mélèse
2010 ◽  
Vol 1797 ◽  
pp. 32-33
Author(s):  
Anil Kumar ◽  
Malathy Sony Subramanian Manimekalai ◽  
Asha Manikkoth Balakrishna ◽  
Gerhard Grüber

2004 ◽  
Vol 279 (44) ◽  
pp. 46057-46064 ◽  
Author(s):  
Zulfiqar Ahmad ◽  
Alan E. Senior

In the catalytic mechanism of ATP synthase, phosphate (Pi) binding and release steps are believed to be correlated to γ-subunit rotation, and Pibinding is proposed to be prerequisite for binding ADP in the face of high cellular [ATP]/[ADP] ratios. In x-ray structures, residue βAsn-243 appears centrally located in the Pi-binding subdomain of catalytic sites. Here we studied the role of βAsn-243 inEscherichia coliATP synthase by mutagenesis to Ala and Asp. Mutation βN243A caused 30-fold impairment of F1-ATPase activity; 7-chloro-4-nitrobenzo-2-oxa-1,3-diazole inhibited this activity less potently than in wild type and Piprotected from inhibition. ADP-fluoroaluminate was more inhibitory than in wild-type, but ADP-fluoroscandium was less inhibitory. βN243D F1-ATPase activity was impaired by 1300-fold and was not inhibited by ADP-fluoroaluminate or ADP-fluoroscandium. 7-chloro-4-nitrobenzo-2-oxa-1,3-diazole activated βN243D F1-ATPase, and Pidid not affect activation. We conclude that residue βAsn-243 is not involved in Pibinding directly but is necessary for correct organization of the transition state complex through extensive involvement in hydrogen bonding to neighboring residues. It is also probably involved in orientation of the “attacking water” and of an associated second water.


2021 ◽  
Vol 118 (8) ◽  
pp. e2021012118
Author(s):  
Tobias E. Spikes ◽  
Martin G. Montgomery ◽  
John E. Walker

The ATP synthase complexes in mitochondria make the ATP required to sustain life by a rotary mechanism. Their membrane domains are embedded in the inner membranes of the organelle, and they dimerize via interactions between their membrane domains. The dimers form extensive chains along the tips of the cristae with the two rows of monomeric catalytic domains extending into the mitochondrial matrix at an angle to each other. Disruption of the interface between dimers by mutation affects the morphology of the cristae severely. By analysis of particles of purified dimeric bovine ATP synthase by cryo-electron microscopy, we have shown that the angle between the central rotatory axes of the monomeric complexes varies between ca. 76 and 95°. These particles represent active dimeric ATP synthase. Some angular variations arise directly from the catalytic mechanism of the enzyme, and others are independent of catalysis. The monomer–monomer interaction is mediated mainly by j subunits attached to the surface of wedge-shaped protein-lipid structures in the membrane domain of the complex, and the angular variation arises from rotational and translational changes in this interaction, and combinations of both. The structures also suggest how the dimeric ATP synthases might be interacting with each other to form the characteristic rows along the tips of the cristae via other interwedge contacts, molding themselves to the range of oligomeric arrangements observed by tomography of mitochondrial membranes, and at the same time allowing the ATP synthase to operate under the range of physiological conditions that influence the structure of the cristae.


Author(s):  
Edward. P. Gogol ◽  
Roderick. A. Capaldi

The F1F0 ATP synthase is the enzymatic complex which interconverts the electrochemical energy of the transmembrane proton gradient, generated by oxidative phosphorylation of metabolic substrates, into the energy currency of ATP. In doing so, it reversibly couples transmembrane proton flow to the catalysis of the high energy terminal phosphate bond of ATP. Even the simplest example of the enzyme, the bacterial F1F0, is a complex assembly of eight subunits in non-unit stoichiometry, five making up the catalytic F1 portion (α3β3γδε) and three the F0, the proton channel (a b2c10‒12) We are attempting to understand the role of subunit interactions in the coupling phenomenon and the catalytic mechanism, which exhibits an extraordinarily high degree of allosteric cooperativity.Three-dimensional reconstruction of negatively stained arrays of the F1 has shown it to be a hexagonal barrel-shaped structure; cryoelectron microscopy of unstained, frozen-hydrated specimens (figure 1a) has revealed an interior cavity partially occluded by an internal structure.Immunolabelling with monoclonal Fab fragments to the α subunit, followed by alignment and averaging of cryoelectron images, has demonstrated the alternating αβ arrangement of subunits around the periphery of the F1. The internal structure has also been localized next to one of the (catalytic) β subunits (see figure 2a,b). Addition of Fab fragments to the carboxy-terminal part of the (single-copy) γ subunit preserves the characteristic triangular appearance and uniform orientation of the Fl-Fab complexes (figure lb).Averages of these images place the additional density of the label at the periphery of the structure, superimposed on a β subunit (figure 2c). Surprisingly, similar results are obtained with readily-binding monoclonal antibodies to each of the single-copy subunits.


eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Anna Zhou ◽  
Alexis Rohou ◽  
Daniel G Schep ◽  
John V Bason ◽  
Martin G Montgomery ◽  
...  

Adenosine triphosphate (ATP), the chemical energy currency of biology, is synthesized in eukaryotic cells primarily by the mitochondrial ATP synthase. ATP synthases operate by a rotary catalytic mechanism where proton translocation through the membrane-inserted FO region is coupled to ATP synthesis in the catalytic F1 region via rotation of a central rotor subcomplex. We report here single particle electron cryomicroscopy (cryo-EM) analysis of the bovine mitochondrial ATP synthase. Combining cryo-EM data with bioinformatic analysis allowed us to determine the fold of the a subunit, suggesting a proton translocation path through the FO region that involves both the a and b subunits. 3D classification of images revealed seven distinct states of the enzyme that show different modes of bending and twisting in the intact ATP synthase. Rotational fluctuations of the c8-ring within the FO region support a Brownian ratchet mechanism for proton-translocation-driven rotation in ATP synthases.


Author(s):  
Tobias E. Spikes ◽  
Martin G. Montgomery ◽  
John E. Walker

SUMMARYThe ATP synthase complexes in mitochondria make the ATP required to sustain life by a rotary mechanism. Their membrane domains are embedded in the inner membranes of the organelle and they dimerize via interactions between their membrane domains. The dimers form extensive chains along the tips of the cristae with the two rows of monomeric catalytic domains extending into the mitochondrial matrix at an angle to each other. When the interaction between membrane domains is disrupted in living cells, the morphology of the cristae is affected severely. By analysis of particles of purified dimeric bovine ATP synthase by cryo-electron microscopy, we have shown that the angle between the central rotatory axes of the monomeric complexes varies between ca. 76° and ca. 95°. Some variations in this angle arise directly from the catalytic mechanism of the enzyme, and others are independent of catalysis. The monomer-monomer interaction is mediated mainly by j-subunits attached to the surface of wedge shaped protein-lipid structures in the membrane domain of the complex, and the angular variation arises from rotational and translational changes in this interaction, and combinations of both. The structures also suggest how the dimeric ATP synthases might be interacting with each other to form the characteristic rows along the tips of the cristae via other inter-wedge contacts, moulding themselves to the range of oligomeric arrangements observed by tomography of mitochondrial membranes, and at the same time allowing the ATP synthase to operate under the range of physiological conditions that influence the structure of the cristae.


Author(s):  
Florine Cavelier ◽  
Christine Enjalbal ◽  
Jérôme Santolini ◽  
Francis Haraux ◽  
Claude Sigalat ◽  
...  

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