Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila

Author(s):

Yad Ghavi-Helm ◽

Bingqing Zhao ◽

Eileen E. M. Furlong

Keyword(s):

Transcription Factor ◽

Histone Modifications ◽

Chromatin Immunoprecipitation Assays: Analyzing Transcription Factor Binding and Histone Modifications In Vivo

Methods in Molecular Biology - Chromatin Protocols ◽

10.1007/978-1-59745-190-1_22 ◽

2009 ◽

pp. 323-339 ◽

Cited By ~ 17

Author(s):

Smitha Pillai ◽

Piyali Dasgupta ◽

Srikumar P. Chellappan

Keyword(s):

Transcription Factor ◽

Histone Modifications ◽

Chromatin Immunoprecipitation Assays: Analyzing Transcription Factor Binding and Histone Modifications In Vivo

Methods in Molecular Biology - Chromatin Protocols ◽

10.1007/978-1-4939-2474-5_25 ◽

2015 ◽

pp. 429-446 ◽

Author(s):

Smitha Pillai ◽

Piyali Dasgupta ◽

Srikumar P. Chellappan

Keyword(s):

Transcription Factor ◽

Histone Modifications ◽

Transcription Factor Binding Studies in CD4+ T Cells: siRNA Transfection, Chromatin Immunoprecipitation, and Liquid Luminescent DNA Precipitation Assay

Methods in Molecular Biology - Th9 Cells ◽

10.1007/978-1-4939-6877-0_13 ◽

2017 ◽

pp. 167-177

Author(s):

Etienne Humblin ◽

François Ghiringhelli ◽

Frédérique Végran

Keyword(s):

T Cells ◽

Transcription Factor ◽

Cd4 T Cells ◽

Sirna Transfection ◽

Binding Studies ◽

Factor Binding ◽

Dna Precipitation

Chromatin Immunoprecipitation and Multiplex Sequencing (ChIP-Seq) to Identify Global Transcription Factor Binding Sites in the Nematode Caenorhabditis Elegans

Methods in Enzymology - Laboratory Methods in Enzymology: Protein Part B ◽

10.1016/b978-0-12-420120-0.00007-4 ◽

2014 ◽

pp. 89-111 ◽

Author(s):

Cathleen M. Brdlik ◽

Wei Niu ◽

Michael Snyder

Keyword(s):

Transcription Factor ◽

Caenorhabditis Elegans ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Nematode Caenorhabditis Elegans ◽

Factor Binding ◽

Multiplex Sequencing

Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans

Nature Protocols ◽

10.1038/nprot.2008.38 ◽

2008 ◽

Vol 3 (4) ◽

pp. 698-709 ◽

Cited By ~ 154

Author(s):

Arnab Mukhopadhyay ◽

Bart Deplancke ◽

Albertha J M Walhout ◽

Heidi A Tissenbaum

Keyword(s):

Transcription Factor ◽

Caenorhabditis Elegans ◽

Real Time ◽

Real Time Pcr ◽

Quantitative Real Time Pcr ◽

Gestational low protein diet selectively induces the amino acid response pathway target genes in the liver of offspring rats through transcription factor binding and histone modifications

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms ◽

10.1016/j.bbagrm.2011.07.003 ◽

2011 ◽

Vol 1809 (10) ◽

pp. 549-556 ◽

Cited By ~ 18

Author(s):

Dan Zhou ◽

Yuan-Xiang Pan

Keyword(s):

Transcription Factor ◽

Amino Acid ◽

Histone Modifications ◽

Target Genes ◽

Protein Diet ◽

Low Protein Diet ◽

Factor Binding ◽

Low Protein ◽

Amino Acid Response

Use of chromatin immunoprecipitation (chip) to detect transcription factor binding to highly homologous promoters in chromatin isolated from unstimulated and activated primary human B cells

Biological Procedures Online ◽

10.1251/bpo117 ◽

2006 ◽

Vol 8 (1) ◽

pp. 44-54 ◽

Author(s):

Rebecca L. Dryer ◽

Lori R. Covey

Keyword(s):

Transcription Factor ◽

B Cells ◽

Factor Binding ◽

Human B Cells

Methylation QTLs Are Associated with Coordinated Changes in Transcription Factor Binding, Histone Modifications, and Gene Expression Levels

PLoS Genetics ◽

10.1371/journal.pgen.1004663 ◽

2014 ◽

Vol 10 (9) ◽

pp. e1004663 ◽

Cited By ~ 166

Author(s):

Nicholas E. Banovich ◽

Xun Lan ◽

Graham McVicker ◽

Bryce van de Geijn ◽

Jacob F. Degner ◽

...

Keyword(s):

Gene Expression ◽

Transcription Factor ◽

Histone Modifications ◽

Expression Levels ◽

Factor Binding ◽

Gene Expression Levels

Transcription factor binding predicts histone modifications in human cell lines

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1412081111 ◽

2014 ◽

Vol 111 (37) ◽

pp. 13367-13372 ◽

Cited By ~ 60

Author(s):

Dan Benveniste ◽

Hans-Joachim Sonntag ◽

Guido Sanguinetti ◽

Duncan Sproul

Keyword(s):

Transcription Factor ◽

Cell Lines ◽

Histone Modifications ◽

Human Cell ◽

Human Cell Lines ◽

Site-specific chromatin immunoprecipitation: a selective method to individually analyze neighboring transcription factor binding sites in vivo

BMC Research Notes ◽

10.1186/1756-0500-5-109 ◽

2012 ◽

Vol 5 (1) ◽

Cited By ~ 5

Author(s):

Ronaldo Schuch ◽

Konstantin Agelopoulos ◽

Anna Neumann ◽

Burkhard Brandt ◽

Horst Bürger ◽

...

Keyword(s):

Transcription Factor ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Site Specific ◽

Selective Method ◽