Computational Methods for Comparative Analysis of Plant Small RNAs

2009 ◽  
pp. 163-181 ◽  
Author(s):  
Gayathri Mahalingam ◽  
Blake C. Meyers
Keyword(s):  
Comparative Analysis ◽  
Computational Methods ◽  
Small Rnas

scholarly journals Comparative analysis of virus-derived small RNAs within cassava (Manihot esculenta Crantz) infected with cassava brown streak viruses

2016 ◽  
Vol 215 ◽  
pp. 1-11 ◽  
Author(s):  
Emmanuel Ogwok ◽  
Muhammad Ilyas ◽  
Titus Alicai ◽  
Marie E.C. Rey ◽  
Nigel J. Taylor
Keyword(s):  
Comparative Analysis ◽  
Manihot Esculenta ◽  
Small Rnas ◽  
Manihot Esculenta Crantz ◽  
Brown Streak

scholarly journals Comparative analysis of oxidative mechanisms of phloroglucinol and dieckol by electrochemical, spectroscopic, cellular and computational methods

RSC Advances ◽  
2018 ◽  
Vol 8 (4) ◽  
pp. 1963-1972 ◽  
Author(s):  
Di Zhang ◽  
Chengtao Wang ◽  
Lingqin Shen ◽  
Hyeon-Cheol Shin ◽  
Kyung Bok Lee ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Computational Methods ◽  
Ph Dependent

The pH-dependent oxidative mechanism of two phlorotannin compounds.

scholarly journals Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo

2019 ◽  
Vol 13 (11) ◽  
pp. e0007811 ◽  
Author(s):  
Juan F. Quintana ◽  
Sujai Kumar ◽  
Alasdair Ivens ◽  
Franklin W. N. Chow ◽  
Anna M. Hoy ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Small Rnas ◽  
Filarial Nematode ◽  
Litomosoides Sigmodontis

scholarly journals A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R

2017 ◽  
Vol 8 ◽  
Author(s):  
Xie Fuli ◽  
Zhao Wenlong ◽  
Wang Xiao ◽  
Zhang Jing ◽  
Hao Baohai ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Small Rnas ◽  
Mesorhizobium Huakuii ◽  
Genome Wide ◽  
A Genome

scholarly journals Comparative analysis of 11 different radioisotopes for palliative treatment of bone metastases by computational methods

2014 ◽  
Vol 41 (11) ◽  
pp. 114101 ◽  
Author(s):  
Francisco D. C. Guerra Liberal ◽  
Adriana Alexandre S. Tavares ◽  
João Manuel R. S. Tavares
Keyword(s):  
Comparative Analysis ◽  
Bone Metastases ◽  
Computational Methods ◽  
Palliative Treatment

scholarly journals Comparative Analysis of Cotton Small RNAs and Their Target Genes in Response to Salt Stress

Genes ◽  
2017 ◽  
Vol 8 (12) ◽  
pp. 369 ◽  
Author(s):  
Zujun Yin ◽  
Xiulan Han ◽  
Yan Li ◽  
Junjuan Wang ◽  
Delong Wang ◽  
...  
Keyword(s):  
Salt Stress ◽  
Comparative Analysis ◽  
Small Rnas ◽  
Target Genes

scholarly journals Biogenesis of a young, 22-nt microRNA in Phaseoleae species by precursor-programmed uridylation

2018 ◽  
Author(s):  
Qili Fei ◽  
Yu Yu ◽  
Li Liu ◽  
Yu Zhang ◽  
Patricia Baldrich ◽  
...  
Keyword(s):  
Comparative Analysis ◽  
Small Rnas ◽  
Post Processing ◽  
Young Plant ◽  
Precursor Processing ◽  
Mature Form ◽  
Plant Mirna ◽  
Secondary Sirnas ◽  
Precursor Structure ◽  
Mirna Duplex

ABSTRACTPhased, secondary siRNAs (phasiRNAs) represent a class of small RNAs in plants generated via distinct biogenesis pathways, predominantly dependent on the activity of 22 nt miRNAs. Most 22 nt miRNAs are processed by DCL1 from miRNA precursors containing an asymmetric bulge, yielding a 22/21 nt miRNA/miRNA* duplex. Here we show that miR1510, a soybean miRNA capable of triggering phasiRNA production from numerous NB-LRRs, previously described as 21 nt in its mature form, primarily accumulates as a 22 nt isoform via monouridylation. We demonstrate that in Arabidopsis, this uridylation is performed by HESO1. Biochemical experiments showed that the 3’ terminus of miR1510 is only partially 2’-O-methylated, because of the terminal mispairing in the miR1510/miR1510* duplex that inhibits HEN1 activity in soybean. miR1510 emerged in the Phaseoleae ~41 to 42 MYA with a conserved precursor structure yielding a 22 nt monouridylated form, yet a variant in mung bean is processed directly in a 22 nt mature form. This analysis of miR1510 yields two observations: (1) plants can utilize post-processing modification to generate abundant 22 nt miRNA isoforms to more efficiently regulate target mRNA abundances; (2) comparative analysis demonstrates an example of selective optimization of precursor processing of a young plant miRNA.

Prices and welfare: a comparative analysis of measures and computational methods

2018 ◽  
Vol 57 (4) ◽  
pp. 1077-1101 ◽  
Author(s):  
Abdelkrim Araar ◽  
Paolo Verme
Keyword(s):  
Comparative Analysis ◽  
Computational Methods
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