Stable Extracellular DNA: A Novel Substrate for Genetic Engineering that Mimics Horizontal Gene Transfer in Nature

Author(s):  
Shinya Kaneko ◽  
Mitsuhiro Itaya
Author(s):  
Amartya Nandi ◽  
Kanav Sharma ◽  
Bhavana M. Puri ◽  
Bhaskar R. Puri ◽  
Mansi Bose

ABSTRACT: Bacteriophages or phages are the most abundant organisms in the biosphere and are an omnipresent feature of prokaryotic existence. A bacteriophage is a virus which infects a bacterium and can be used for multiple perspectives in biological sciences. With the capability of better bio-film penetration, they are target-specific in nature, lyse bacteria at the site of infection and can be called as targeted antibiotics in the field of medical science. Phages can be used in agricultural industries, petroleum industries and as bio-control agents. With recent advancement of technologies and techniques, phages can be used as vehicles for vaccine delivery to humans and other mammals. In genetic engineering, they can be used as vectors for horizontal gene transfer. Phages possess good therapeutic and clinical values for cancer and HIV therapies. They are revolutionizing CRISPRCas9 resistance and extend the frontier for bio-control and bio-processing. Bacteriophages have the ability to reform modern medical science due to its uniqueness and specificity on pathogens. many researchers and institutions have taken a step forward and are analyzing phage human interactions at genomic and proteomic levels. We can conclude that future era of biotechnology can be led by these genius viruses which possess a scientific uniqueness in them and leading biological research to new extents.


Author(s):  
Iván Camilo Acosta ◽  
Leonardo Posada ◽  
Mónica Gabriela Huertas ◽  
María Mercedes Zambrano Eder

Antibiotic-resistant bacteria represent a global risk to public health. Horizontal gene transfer, a common mechanism for genetic exchange in bacteria, plays an essential role in the acquisition of resistance genes. In this work, we evaluated the effect of sub-lethal concentrations of antibiotics on plasmid transfer by conjugation and transformation in the opportunistic pathogen Klebsiella pneumoniae. Despite not being naturally competent, this bacterium could acquire extracellular DNA from various plasmids at a very low frequency, which increased upon incubating cells with the aminoglycoside antibiotics amikacin and gentamicin. Transfer by conjugation analyzed using a clinical isolate carrying plasmid pNDM-1 also increased in the presence of sub-lethal concentrations of antibiotics. An RNAseq analysis showed differential expression of several genes when cells were incubated in the presence of sub-lethal concentrations of amikacin suggesting metabolic and regulatory changes, as well as alteration of cell envelope components that could affect the uptake of foreign DNA. These results suggest that sub-lethal concentrations of some aminoglycosides, in particular amikacin, can promote the transfer of resistance-bearing genetic elements in K. pneumoniae, which is relevant for understanding the spread of resistance determinants in this human pathogen.


2015 ◽  
Vol 197 (14) ◽  
pp. 2422-2431 ◽  
Author(s):  
Nadzeya Kouzel ◽  
Enno R. Oldewurtel ◽  
Berenike Maier

ABSTRACTExtracellular DNA is an important structural component of many bacterial biofilms. It is unknown, however, to which extent external DNA is used to transfer genes by means of transformation. Here, we quantified the acquisition of multidrug resistance and visualized its spread under selective and nonselective conditions in biofilms formed byNeisseria gonorrhoeae. The density and architecture of the biofilms were controlled by microstructuring the substratum for bacterial adhesion. Horizontal transfer of antibiotic resistance genes between cocultured strains, each carrying a single resistance, occurred efficiently in early biofilms. The efficiency of gene transfer was higher in early biofilms than between planktonic cells. It was strongly reduced after 24 h and independent of biofilm density. Pilin antigenic variation caused a high fraction of nonpiliated bacteria but was not responsible for the reduced gene transfer at later stages. When selective pressure was applied to dense biofilms using antibiotics at their MIC, the double-resistant bacteria did not show a significant growth advantage. In loosely connected biofilms, the spreading of double-resistant clones was prominent. We conclude that multidrug resistance readily develops in early gonococcal biofilms through horizontal gene transfer. However, selection and spreading of the multiresistant clones are heavily suppressed in dense biofilms.IMPORTANCEBiofilms are considered ideal reaction chambers for horizontal gene transfer and development of multidrug resistances. The rate at which genes are exchanged within biofilms is unknown. Here, we quantified the acquisition of double-drug resistance by gene transfer between gonococci with single resistances. At early biofilm stages, the transfer efficiency was higher than for planktonic cells but then decreased with biofilm age. The surface topography affected the architecture of the biofilm. While the efficiency of gene transfer was independent of the architecture, spreading of double-resistant bacteria under selective conditions was strongly enhanced in loose biofilms. We propose that while biofilms help generating multiresistant strains, selection takes place mostly after dispersal from the biofilm.


2021 ◽  
Vol 12 ◽  
Author(s):  
Tjaša Danevčič ◽  
Anna Dragoš ◽  
Mihael Spacapan ◽  
Polonca Stefanic ◽  
Iztok Dogsa ◽  
...  

Genetic competence for the uptake and integration of extracellular DNA is a key process in horizontal gene transfer (HGT), one of the most powerful forces driving the evolution of bacteria. In several species, development of genetic competence is coupled with cell lysis. Using Bacillus subtilis as a model bacterium, we studied the role of surfactin, a powerful biosurfactant and antimicrobial lipopeptide, in genetic transformation. We showed that surfactin itself promotes cell lysis and DNA release, thereby promoting HGT. These results, therefore, provide evidence for a fundamental mechanism involved in HGT and significantly increase our understanding of the spreading of antibiotic resistance genes and diversification of microbial communities in the environment.


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