Synchrotron Radiation for Electron Density Studies

Author(s):  
Pierre J. Becker
Author(s):  
Stefan Mebs ◽  
Anja Lüth ◽  
Wolfgang Löwe ◽  
Carsten Paulmann ◽  
Peter Luger

AbstractThe electron density (ED) of a substituted 4-(indol-3-yl)-quinazoline, a newly developed anti-cancer drug, was determined from a high resolution X-ray data set measured at 100 K using synchrotron radiation. Because the structure contains a chlorine atom, which has a diffuse outer electron shell and is therefore beyond standard modeling, the influence of the model on the bond topological and atomic properties was studied following Bader's approach of ‘Atoms In Molecules’ (AIM). The expansion/contraction parameters


Author(s):  
A. M. Glazer

It is clear that knowledge of the relative phases is essential if we wish to find the atoms in a crystal. So what do we do if we do not have phase information? ‘Seeing atoms’ describes the phase problem and the different methods of phase determination used by crystallographers: a difference Fourier map; the Patterson method; electron density maps; multiple isomorphous replacement; multiple-wavelength anomalous dispersion using synchrotron radiation, which is often used in macromolecular crystallography; molecular replacement, commonly used in protein crystallography; the Sayre equation, a mathematical relationship that enables probable values for the phases of some diffracted beams to be found; and a new technique called charge flipping.


1997 ◽  
Vol 53 (3) ◽  
pp. 420-428 ◽  
Author(s):  
R. Hsu ◽  
E. N. Maslen ◽  
D. du Boulay ◽  
N. Ishizawa

The structural geometry, vibrations and deformation density Δρ for lithium niobate, LiNbO3, and lithium tantalate, LiTaO3, are derived from synchrotron radiation diffraction measurements. Electron density is transferred from the Nb (Ta) atom towards the large O3 triangle near the Li atom. Spontaneous polarizations of 0.43 (LiNbO3) and 0.33 cm−2 (LiTaO3), calculated with Hirshfeld charges, agree qualitatively with experimental values of 0.71 and 0.50 −2, respectively. Both strong Li...Nb (Ta) interactions in the structure are markedly shorter than all Li...Li, Nb...Nb or Ta...Ta vectors, as expected if the Li and Nb (Ta) cations carry charges of opposite sign. The Li atom's negative charge plays a pivotal role in the polarization responsible for ferroelectricity. LiNbO3, space group R3c, rhombohedral, M r = 147.8, a = 5.493 (2) Å, α = 55.89 (3)°, V = 106.02 (4) Å3, Z = 2, D x = 4.629 Mg m−3, F(000) = 136, μ(0.7 Å) = 5.01 mm−l, y min = 0.27, T = 293 K, R = 0.015, wR = 0.015, S = 3.276 (84) for 773 unique reflections. LiTaO3, R3c, rhombohedral, M r = 235.9, a = 5.471 (2) Å, α = 56.16 (3)°, V = 105.51 (4) Å3, Z = 2, D x = 7.412 Mg m−3, F(000) = 200, μ(0.7 Å) = 50.03 mm−1, y min = 0.32, T = 293 K, R = 0.016, wR = 0.022, S = 1.372(35) for 773 unique reflections.


1996 ◽  
Vol 52 (3) ◽  
pp. 406-413 ◽  
Author(s):  
E. N. Maslen ◽  
V. A. Streltsov ◽  
N. Ishizawa

Structure factors for small, hydrothermally grown samarium orthoferrite, SmFeO3, were measured with focused λ = 0.7 Å synchrotron radiation. Approximate high symmetry in the Δρ images indicates that cations deform the electron density far more strongly than the O atoms. The most obvious effect is on distribution of the Fe atoms. The influence of the nearest low-symmetry (Cs ) O coordination on the electron density of the Sm cation is weak by comparison with that of the Sm–Fe interactions, as is illustrated by the high symmetry of the Δρ map near the Sm atom. The Sm–Fe interactions appear to affect the magnetic ordering and spin configuration of the Fe atoms. Space group Pnma, orthorhombic, Mr = 254.20, a = 5.6001 (3), b = 7.7060 (7), c = 5.3995 (6) Å, V = 233.01 (4) Å3, Z = 4, Dx = 7.246 Mg m−3, μ 0.7 = 28.5 mm−1, F(000) = 448, T = 293 K, R = 0.017, wR = 0.021, S = 3.83 (8) for 1329 unique reflections.


2003 ◽  
Vol 48 (5) ◽  
pp. 673-685 ◽  
Author(s):  
Masami Torikoshi ◽  
Takanori Tsunoo ◽  
Makoto Sasaki ◽  
Masahiro Endo ◽  
Yutaka Noda ◽  
...  

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