Mechanisms Underlying Host Range Variation in Flavivirus: From Empirical Knowledge to Predictive Models

Author(s):  
Keren Halabi ◽  
Itay Mayrose
2017 ◽  
Author(s):  
Olivier Navaud ◽  
Adelin Barbacci ◽  
Andrew Taylor ◽  
John P. Clarkson ◽  
Sylvain Raffaele

AbstractThe range of hosts that a parasite can infect in nature is a trait determined by its own evolutionary history and that of its potential hosts. However, knowledge on host range diversity and evolution at the family level is often lacking. Here, we investigate host range variation and diversification trends within theSclerotiniaceae, a family of Ascomycete fungi. Using a phylogenetic framework, we associate diversification rates, the frequency of host jump events, and host range variation during the evolution of this family. Variations in diversification rate during the evolution of the Sclerotiniaceae define three major macro-evolutionary regimes with contrasted proportions of species infecting a broad range of hosts. Host-parasite co-phylogenetic analyses pointed towards parasite radiation on distant hosts long after host speciation (host jump or duplication events) as the dominant mode of association with plants in theSclerotiniaceae. The intermediate macro-evolutionary regime showed a low diversification rate, high frequency of duplication events, and the highest proportion of broad host range species. Consistent with previous reports on oomycete parasites, our findings suggest that host jump and radiation, possibly combined with low speciation rates, could associate with the emergence of generalist pathogens. These results have important implications for our understanding of fungal parasites evolution and are of particular relevance for the durable management of disease epidemics.


Nematologica ◽  
1982 ◽  
Vol 28 (3) ◽  
pp. 263-270 ◽  
Author(s):  
Jannie Dede ◽  
P.W. Th Maas ◽  
Elly Du Bois
Keyword(s):  

eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Thomas Badet ◽  
Remi Peyraud ◽  
Malick Mbengue ◽  
Olivier Navaud ◽  
Mark Derbyshire ◽  
...  

The range of hosts that parasites can infect is a key determinant of the emergence and spread of disease. Yet, the impact of host range variation on the evolution of parasite genomes remains unknown. Here, we show that codon optimization underlies genome adaptation in broad host range parasites. We found that the longer proteins encoded by broad host range fungi likely increase natural selection on codon optimization in these species. Accordingly, codon optimization correlates with host range across the fungal kingdom. At the species level, biased patterns of synonymous substitutions underpin increased codon optimization in a generalist but not a specialist fungal pathogen. Virulence genes were consistently enriched in highly codon-optimized genes of generalist but not specialist species. We conclude that codon optimization is related to the capacity of parasites to colonize multiple hosts. Our results link genome evolution and translational regulation to the long-term persistence of generalist parasitism.


1985 ◽  
Vol 53 (1) ◽  
pp. 32-39 ◽  
Author(s):  
A J Dorner ◽  
J P Stoye ◽  
J M Coffin

1992 ◽  
Vol 46 (1) ◽  
pp. 497-531 ◽  
Author(s):  
J Denarie ◽  
F Debelle ◽  
C Rosenberg
Keyword(s):  

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