Does the Reproductive Strategy Affect the Transmission and Genetic Diversity of Bionts in Cyanolichens? A Case Study Using Two Closely Related Species

2012 ◽  
Vol 65 (2) ◽  
pp. 517-530 ◽  
Author(s):  
Mónica A. G. Otálora ◽  
Clara Salvador ◽  
Isabel Martínez ◽  
Gregorio Aragón
Keyword(s):  
Genetic Diversity ◽  
Related Species ◽  
Reproductive Strategy ◽  
Closely Related Species

Are polymorphic species of Uropodina (Acari: Mesostigmata) more successful evolutionarily?—A case study of closely related species from the genus Oodinychus Berlese, 1917 based on DNA sequences

2019 ◽  
Vol 24 (5) ◽  
pp. 866
Author(s):  
Jerzy Błoszyk ◽  
Katarzyna Buczkowska ◽  
Anna Maria Bobowicz ◽  
Alina Bączkiewicz ◽  
Zbigniew Adamski ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Related Species ◽  
Habitat Preferences ◽  
Abundant Species ◽  
Systematic Position ◽  
Genetic Differences ◽  
Similar Species ◽  
Closely Related Species ◽  
Wide Range

The study presented in this research paper is the first taxonomic investigation focusing on Uropodina (Acari: Mesostigmata) mites with a brief discussion of the genetic differences of two very closely related species from the genus Oodinychus Berlese, 1917, i.e. O. ovalis (C.L. Koch, 1839) and O. karawaiewi (Berlese, 1903). These two morphologically similar species are quite common and they have a wide range of occurrence in Europe. They also live in almost the same types of habitat. However, O. ovalis usually exhibits higher abundance and frequency of occurrence. The major aim of the study was to carry out a comparative analysis of the systematic position, morphological and biological differences, as well as habitat preferences and distribution of O. ovalis and O. karawaiewi. The next aim was to ascertain whether the differences in number and frequency of these species may stem from the genetic differences at the molecular level (16S rDNA and COI). The study shows that O. ovalis, which is a more abundant species than O. karawaiewi, turned out to be genetically more polymorphic.

scholarly journals Genetic Diversity and Relatedness Among Six Ranunculus Species Unraveled by SRAP Markers

2018 ◽  
Vol 75 (2) ◽  
Author(s):  
Cristina D. KELEMEN ◽  
Monica HÂRŢA ◽  
Orsolya BORSAI ◽  
Katalin SZABO ◽  
Doina CLAPA ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Related Species ◽  
Gene Diversity ◽  
Similarity Coefficient ◽  
Evolutionary Relationships ◽  
Closely Related Species ◽  
Srap Markers ◽  
Subgroup Ii ◽  
Species Cluster ◽  
Cluster A

The main aim of this study was to investigate the genetic diversity and phylogenetic relationships of six Ranunculus species using SRAP markers. The genotyping of 73 Ranunculus accessions showed that 12 primer pairs generated a total number of 212 polymorphic fragments with a 99.53 % level of polymorphism. Nei’s gene diversity ranged between 0.2237 and 0.3436 with an average of 0.3001. The UPGMA method with Nei72’s similarity coefficient ranging from 0.23 to 1.11 separated 73 accessions into two distinct groups (A and B). Cluster-A included R. acris members, while cluster-B included the rest of the tested species. Cluster-B was subsequently divided into two sub-groups (I and II). Subgroup-I consisted of R. carpaticus and R. serpens subsp. nemorosus accessions, while subgroup-II included the members of R. platanifolius, R. polyanthemos, and R. repens. R. polyanthemos and R. repens were founded the most closely related species. These findings provide a brand-new understanding of the evolutionary relationships of above mentioned Ranunculus species and may be useful tools for plant breeding and conservation purposes.

scholarly journals Signatures of selection and genomic diversity of Muskellunge (Esox masquinongy) from two populations in North America.

2021 ◽  
Author(s):  
Josue Chinchilla-Vargas ◽  
Jonathan R. Meerbeek ◽  
Max F. Rothschild ◽  
Francesca Bertolini
Keyword(s):  
Genetic Diversity ◽  
North America ◽  
Related Species ◽  
Reference Genome ◽  
Genetic Differences ◽  
Genomic Diversity ◽  
Closely Related Species ◽  
Esox Masquinongy ◽  
Inbreeding Rate ◽  
Signatures Of Selection

Abstract Background Muskellunge (Esox masquinongy) is the largest and most prized game fish for anglers in North America. However, little is known about Muskellunge genetic diversity in Iowa’s propagation program. We used whole genome sequence from 12 brooding individuals from Iowa and publicly available RAD-seq of 625 individuals from Saint-Lawrence river in Canada to study the genetic differences between populations, analyze signatures of selection that might shed light on environmental adaptations, and evaluate the levels of genetic diversity in both populations. Given that there is no reference genome available for Muskellunge, reads were aligned to the genome of Pike (Esox lucius), a closely-related species.Results Variant calling produced 7,886,471 biallelic variants for the Iowa population and 16,867 high-quality SNPs that overlap with the Canadian samples. The Ti/Tv values were 1.09 and 1.29 for samples from Iowa and Canada, respectively. PCA and Admixture analyses showed a large genetic difference between Canadian and Iowan populations. Moreover, PCA showed clustering by sex in the Iowan population although widow-based Fst did not find outlier regions. Window-based pooled heterozygosity found 6 highly heterozygous windows containing 244 genes in the Iowa population and Fst comparing the Iowa and Canadian populations found 14 windows with Fst values larger than 0.9 containing 641 genes. One enriched GO term (sensory perception of pain) was found through pooled heterozygosity analyzes. Although not significant, several enriched GO terms associated to growth and development were found through Fst analyses.Inbreeding calculated as Froh was 0.03 on average for the Iowa population and 0.32 on average for the Canadian samples. The Canadian inbreeding rate appears to be higher, presumably due to isolation of subpopulations, than the inbreeding rate of the Iowa population.Conclusions This study was the first to document that brood stock Muskellunge from Iowa showed marked genetic differences with the Canadian population. Additionally, despite genetic differentiation based on sex has been observed, no major locus has been detected. Inbreeding does not seem to be an immediate concern for Muskellunge in Iowa, but apparent isolation of subpopulations has caused levels of homozygosity to increase in the Canadian Muskellunge population. Finally, these results prove the validity of using genomes of closely related species to perform genomic analyses when no reference genome assembly is available.

scholarly journals Signatures of selection and genomic diversity of Muskellunge (Esox masquinongy) from two populations in North America.

2021 ◽  
Author(s):  
Josue Chinchilla-Vargas ◽  
Max F. Rothschild ◽  
Francesca Bertolini
Keyword(s):  
Genetic Diversity ◽  
North America ◽  
Related Species ◽  
Reference Genome ◽  
Genetic Differences ◽  
Genomic Diversity ◽  
Whole Genome Sequence ◽  
Closely Related Species ◽  
Esox Masquinongy ◽  
Signatures Of Selection

Abstract Background Muskellunge (Esox masquinongy) is the largest and most prized game fish for anglers in North America. However, little is known about Muskellunge genetic diversity in Iowa’s propagation program. We used whole genome sequence from 12 brooding individuals from Iowa and publicly available RAD-seq of 625 individuals from Saint-Lawrence river in Canada to study the genetic differences between populations, analyze signatures of selection that might shed light on environmental adaptations, and evaluate the levels of genetic diversity in both populations. Given that there is no reference genome available for Muskellunge, reads were aligned to the genome of Pike (Esox lucius), a closely-related species. Results Variant calling produced 7,886,471 biallelic variants for the Iowa population and 16,867 high quality SNPs that overlap with the Canadian samples. The Ti/Tv values were 1.09 and 1.29 for samples from Iowa and Canada, respectively. PCA and Admixture analyses showed a large genetic difference between Canadian and Iowan populations. Moreover, PCA showed a clustering by sex in the Iowan population although widow-based Fst did not find outlier regions. Window based pooled heterozygosity found 6 highly heterozygous windows containing 244 genes in the Iowa population and Fst comparing the Iowa and Canadian populations found 14 windows with Fst values larger than 0.9 containing 641 genes. One enriched GO term (sensory perception of pain) was found through pooled heterozygosity analyzes. Although not significant, several enriched GO terms associated to growth and development were found through Fst analyses. Inbreeding calculated as Froh was 0.03 on average for the Iowa population and 0.32 on average for the Canadian samples. The inbreeding rate appears is presumably due to isolation of subpopulations. Conclusions This study is the first of its kind in Muskellunge from Iowa in which captured brood stock showed marked genetic differences with the Canadian population. Additionally, despite genetic differentiation based on sex has been observed, no major locus has been detected . Inbreeding does not seem to be an immediate concern for Muskellunge in Iowa, isolation of subpopulations has caused levels of homozygosity to increase in the Canadian Muskellunge population. These results prove the validity of using genomes of closely related species to perform genomic analyses when no reference genome assembly is available.

scholarly journals Applying DNA Barcodes to Identify Closely Related Species of Ferns: A Case Study of the Chinese Adiantum (Pteridaceae)

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0160611 ◽  
Author(s):  
Fan-Hong Wang ◽  
Jin-Mei Lu ◽  
Jun Wen ◽  
Atsushi Ebihara ◽  
De-Zhu Li
Keyword(s):  
Related Species ◽  
Dna Barcodes ◽  
Closely Related Species

Regulating colicin synthesis to cope with stress and lethality of colicin production

2012 ◽  
Vol 40 (6) ◽  
pp. 1507-1511 ◽  
Author(s):  
Darja Žgur-Bertok
Keyword(s):  
Escherichia Coli ◽  
Genetic Diversity ◽  
Related Species ◽  
Sos Response ◽  
Translational Efficiency ◽  
Closely Related Species ◽  
E Coli ◽  
Lexa Protein ◽  
Transcription Regulators ◽  
Fine Tune

Colicins are plasmid-encoded bacteriocins active against Escherichia coli and closely related species of Enterobacteriaceae. They promote microbial diversity and genetic diversity in E. coli populations. Colicin synthesis is characteristically repressed by the LexA protein, the key regulator of the SOS response. As colicins are released by cell lysis, generally two LexA dimers binding to two overlapping SOS boxes control untimely expression. Nevertheless, genetic organization of the colicin clusters, additional transcription regulators as well as post-transcriptional mechanisms involving translational efficiency of the lysis and activity genes fine-tune colicin expression and protect against lethality of colicin production.

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