Global transcriptome profiling analysis reveals insight into saliva-responsive genes in alfalfa

2015 ◽  
Vol 35 (3) ◽  
pp. 561-571 ◽  
Author(s):  
Wenxian Liu ◽  
Zhengshe Zhang ◽  
Shuangyan Chen ◽  
Lichao Ma ◽  
Hucheng Wang ◽  
...  
Keyword(s):  
Transcriptome Profiling ◽  
Global Transcriptome ◽  
Profiling Analysis ◽  
Insight Into

Next-generation sequencing-based transcriptome profiling analysis of Pohlia nutans reveals insight into the stress-relevant genes in Antarctic moss

Extremophiles ◽  
2013 ◽  
Vol 17 (3) ◽  
pp. 391-403 ◽  
Author(s):  
Shenghao Liu ◽  
Nengfei Wang ◽  
Pengying Zhang ◽  
Bailin Cong ◽  
Xuezheng Lin ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Transcriptome Profiling ◽  
Next Generation ◽  
Profiling Analysis ◽  
Insight Into ◽  
Generation Sequencing ◽  
Pohlia Nutans ◽  
Antarctic Moss

scholarly journals Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato Toward Phytophthora infestans

2019 ◽  
Vol 10 (2) ◽  
pp. 623-634 ◽  
Author(s):  
Yanfeng Duan ◽  
Shaoguang Duan ◽  
Miles R. Armstrong ◽  
Jianfei Xu ◽  
Jiayi Zheng ◽  
...  
Keyword(s):  
Phytophthora Infestans ◽  
Clustering Analysis ◽  
Transcriptome Profiling ◽  
Defense Responses ◽  
Differentially Expressed ◽  
Incompatible Interaction ◽  
Time Points ◽  
Gene Enrichment ◽  
Profiling Analysis ◽  
Insight Into

Late blight, caused by Phytophthora infestans (P. infestans), is a devastating disease in potato worldwide. Our previous study revealed that the Solanum andigena genotype 03112-233 is resistant to P. infestans isolate 90128, but susceptible to the super race isolate, CN152. In this study, we confirmed by diagnostic resistance gene enrichment sequencing (dRenSeq) that the resistance of 03112-233 toward 90128 is most likely based on a distinct new R gene(s). To gain an insight into the mechanism that governs resistance or susceptibility in 03112-223, comparative transcriptomic profiling analysis based on RNAseq was initiated. Changes in transcription at two time points (24 h and 72 h) after inoculation with isolates 90128 or CN152 were analyzed. A total of 8,881 and 7,209 genes were differentially expressed in response to 90128 and CN152, respectively, and 1,083 differentially expressed genes (DEGs) were common to both time points and isolates. A substantial number of genes were differentially expressed in an isolate-specific manner with 3,837 genes showing induction or suppression following infection with 90128 and 2,165 genes induced or suppressed after colonization by CN152. Hierarchical clustering analysis suggested that isolates with different virulence profiles can induce different defense responses at different time points. Further analysis revealed that the compatible interaction caused higher induction of susceptibility genes such as SWEET compared with the incompatible interaction. The salicylic acid, jasmonic acid, and abscisic acid mediated signaling pathways were involved in the response against both isolates, while ethylene and brassinosteroids mediated defense pathways were suppressed. Our results provide a valuable resource for understanding the interactions between P. infestans and potato.

Global transcriptome profiling analysis of ethylene-auxin interaction during tomato fruit ripening

2017 ◽  
Vol 130 ◽  
pp. 28-38 ◽  
Author(s):  
Jiayin Li ◽  
Xiaoya Tao ◽  
Jianwen Bu ◽  
Tiejin Ying ◽  
Linchun Mao ◽  
...  
Keyword(s):  
Fruit Ripening ◽  
Tomato Fruit ◽  
Transcriptome Profiling ◽  
Tomato Fruit Ripening ◽  
Global Transcriptome ◽  
Profiling Analysis

Transcriptome profiling of Cysticercus Pisiformis provides insight into responses to host bile acids

2021 ◽  
Vol 81 ◽  
pp. 102246
Author(s):  
Zhong-li Liu ◽  
Shuai Wang ◽  
Xue-peng Cai ◽  
Qiao-ying Zeng
Keyword(s):  
Bile Acids ◽  
Transcriptome Profiling ◽  
Insight Into

scholarly journals Gene Expression and Carcass Traits Are Different between Different Quality Grade Groups in Red-Faced Hereford Steers

Animals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1910
Author(s):  
Bailey Engle ◽  
Molly Masters ◽  
Jane Ann Boles ◽  
Jennifer Thomson
Keyword(s):  
Gene Expression ◽  
Transcriptome Profiling ◽  
Fat Deposition ◽  
Lower Shear ◽  
The Us ◽  
Quality Grade ◽  
Longissimus Lumborum ◽  
Muscle Biochemistry ◽  
Marbling Deposition ◽  
Insight Into

Fat deposition is important to carcass value and some palatability characteristics. Carcasses with higher USDA quality grades produce more value for producers and processors in the US system and are more likely to have greater eating satisfaction. Using genomics to identify genes impacting marbling deposition provides insight into muscle biochemistry that may lead to ways to better predict fat deposition, especially marbling and thus quality grade. Hereford steers (16) were managed the same from birth through harvest after 270 days on feed. Samples were obtained for tenderness and transcriptome profiling. As expected, steaks from Choice carcasses had a lower shear force value than steaks from Select carcasses; however, steaks from Standard carcasses were not different from steaks from Choice carcasses. A significant number of differentially expressed (DE) genes was observed in the longissimus lumborum between Choice and Standard carcass RNA pools (1257 genes, p < 0.05), but not many DE genes were observed between Choice and Select RNA pools. Exploratory analysis of global muscle tissue transcriptome from Standard and Choice carcasses provided insight into muscle biochemistry, specifically the upregulation of extracellular matrix development and focal adhesion pathways and the downregulation of RNA processing and metabolism in Choice versus Standard. Additional research is needed to explore the function and timing of gene expression changes.

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