Transcriptome profiling of Cysticercus Pisiformis provides insight into responses to host bile acids

2021 ◽  
Vol 81 ◽  
pp. 102246
Author(s):  
Zhong-li Liu ◽  
Shuai Wang ◽  
Xue-peng Cai ◽  
Qiao-ying Zeng
Animals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1910
Author(s):  
Bailey Engle ◽  
Molly Masters ◽  
Jane Ann Boles ◽  
Jennifer Thomson

Fat deposition is important to carcass value and some palatability characteristics. Carcasses with higher USDA quality grades produce more value for producers and processors in the US system and are more likely to have greater eating satisfaction. Using genomics to identify genes impacting marbling deposition provides insight into muscle biochemistry that may lead to ways to better predict fat deposition, especially marbling and thus quality grade. Hereford steers (16) were managed the same from birth through harvest after 270 days on feed. Samples were obtained for tenderness and transcriptome profiling. As expected, steaks from Choice carcasses had a lower shear force value than steaks from Select carcasses; however, steaks from Standard carcasses were not different from steaks from Choice carcasses. A significant number of differentially expressed (DE) genes was observed in the longissimus lumborum between Choice and Standard carcass RNA pools (1257 genes, p < 0.05), but not many DE genes were observed between Choice and Select RNA pools. Exploratory analysis of global muscle tissue transcriptome from Standard and Choice carcasses provided insight into muscle biochemistry, specifically the upregulation of extracellular matrix development and focal adhesion pathways and the downregulation of RNA processing and metabolism in Choice versus Standard. Additional research is needed to explore the function and timing of gene expression changes.


2015 ◽  
Vol 35 (3) ◽  
pp. 561-571 ◽  
Author(s):  
Wenxian Liu ◽  
Zhengshe Zhang ◽  
Shuangyan Chen ◽  
Lichao Ma ◽  
Hucheng Wang ◽  
...  

2021 ◽  
Author(s):  
Ye Chen ◽  
Xiang Zhou ◽  
Kai Guo ◽  
Sha-Ni Chen ◽  
Xiu Su

Abstract Background: The pine wood nematode Bursaphelenchus xylophilus is a worldwide destructive pest on Pinus trees and lacks effective control measures. Screening nematotoxic protein toxins has been conducted to develop new strategies for nematode control. Results: The present study provided initial insights into the responses of B. xylophilus exposed to a nematocidal cytolytic-like protein (CytCo) based on the transcriptome profiling. A large set of differentially expressed genes (1266 DEGs) were found related to nematode development, reproduction, metabolism, motion, and immune system. In response to the toxic protein, B. xylophilus upregulated DEGs encoding cuticle collagens, transporters, and cytochrome P450. In addition, many DEGs related to cell death, lipid metabolism, major sperm proteins, proteinases/peptidases, phosphatases, kinases, virulence factors, and transthyretin-like proteins were downregulated. And Gene Ontology enrichment analysis showed that CytCo treatment significantly affecting DEGs functioning in muscle contraction, lipid localization, MAPK cascade. The pathway richness of Kyoto Encyclopedia of Genes and Genomes showed that the DEGs were concentrated in lysosome and fatty acid degradation. The weight co-expression network analysis indicated that the hub genes affected by CytCo were associated with the nematode cuticular collagen. Conclusions: These results showed that the CytCo protein toxin could interference gene expression to produce multiple nematotoxic effects, providing initial insight into its control potential of pine wood nematode.


2021 ◽  
Vol 12 ◽  
Author(s):  
Xiaoying Pan ◽  
Junbiao Chen ◽  
Aiguo Yang ◽  
Qinghua Yuan ◽  
Weicai Zhao ◽  
...  

Bacterial wilt (BW) caused by Ralstonia solanacearum (R. solanacearum), is a vascular disease affecting diverse solanaceous crops and causing tremendous damage to crop production. However, our knowledge of the mechanism underlying its resistance or susceptibility is very limited. In this study, we characterized the physiological differences and compared the defense-related transcriptomes of two tobacco varieties, 4411-3 (highly resistant, HR) and K326 (moderately resistant, MR), after R. solanacearum infection at 0, 10, and 17 days after inoculation (dpi). A total of 3967 differentially expressed genes (DEGs) were identified between the HR and MR genotypes under mock condition at three time points, including1395 up-regulated genes in the HR genotype and 2640 up-regulated genes in the MR genotype. Also, 6,233 and 21,541 DEGs were induced in the HR and MR genotypes after R. solanacearum infection, respectively. Furthermore, GO and KEGG analyses revealed that DEGs in the HR genotype were related to the cell wall, starch and sucrose metabolism, glutathione metabolism, ABC transporters, endocytosis, glycerolipid metabolism, and glycerophospholipid metabolism. The defense-related genes generally showed genotype-specific regulation and expression differences after R. solanacearum infection. In addition, genes related to auxin and ABA were dramatically up-regulated in the HR genotype. The contents of auxin and ABA in the MR genotype were significantly higher than those in the HR genotype after R. solanacearum infection, providing insight into the defense mechanisms of tobacco. Altogether, these results clarify the physiological and transcriptional regulation of R. solanacearum resistance infection in tobacco, and improve our understanding of the molecular mechanism underlying the plant-pathogen interaction.


Genes ◽  
2020 ◽  
Vol 11 (10) ◽  
pp. 1155 ◽  
Author(s):  
Geneviève Rioux ◽  
Zainab Ridha ◽  
Mélissa Simard ◽  
Florence Turgeon ◽  
Sylvain L. Guérin ◽  
...  

Psoriasis is an immune-mediated inflammatory skin disease with a complex etiology involving environmental and genetic factors. A better insight into related genomic alteration helps design precise therapies leading to better treatment outcome. Gene expression in psoriasis can provide relevant information about the altered expression of mRNA transcripts, thus giving new insights into the disease onset. Techniques for transcriptome analyses, such as microarray and RNA sequencing (RNA-seq), are relevant tools for the discovery of new biomarkers as well as new therapeutic targets. This review summarizes the findings related to the contribution of keratinocytes in the pathogenesis of psoriasis by an in-depth review of studies that have examined psoriatic transcriptomes in the past years. It also provides valuable information on reconstructed 3D psoriatic skin models using cells isolated from psoriatic patients for transcriptomic studies.


2017 ◽  
Vol 13 (2) ◽  
Author(s):  
José Gaete-Loyola ◽  
Catalina Lagos ◽  
María F. Beltrán ◽  
Sofía Valenzuela ◽  
Verónica Emhart ◽  
...  

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