Transcriptome analysis reveals the potential contribution of long noncoding RNAs to brown adipocyte differentiation

2015 ◽  
Vol 290 (5) ◽  
pp. 1659-1671 ◽  
Author(s):  
Liang hui You ◽  
Li jun Zhu ◽  
Lei Yang ◽  
Chun mei Shi ◽  
Ling xia Pang ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Adipocyte Differentiation ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Brown Adipocyte ◽  
Potential Contribution

scholarly journals Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

BMC Genomics ◽  
2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Amita Kashyap ◽  
Adelaide Rhodes ◽  
Brent Kronmiller ◽  
Josie Berger ◽  
Ashley Champagne ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Castor Canadensis ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
American Beaver

scholarly journals TGStools: A Bioinformatics Suit to Facilitate Transcriptome Analysis of Long Reads from Third Generation Sequencing Platform

Genes ◽  
2019 ◽  
Vol 10 (7) ◽  
pp. 519
Author(s):  
Danze Chen ◽  
Qianqian Zhao ◽  
Leiming Jiang ◽  
Shuaiyuan Liao ◽  
Zhigang Meng ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
De Novo ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Third Generation ◽  
Sequencing Platform ◽  
Third Generation Sequencing ◽  
Long Reads ◽  
Routine Tasks ◽  
Generation Sequencing

Recent analyses show that transcriptome sequencing can be utilized as a diagnostic tool for rare Mendelian diseases. The third generation sequencing de novo detects long reads of thousands of base pairs, thus greatly expanding the isoform discovery and identification of novel long noncoding RNAs. In this study, we developed TGStools, a bioinformatics suite to facilitate routine tasks such as characterizing full-length transcripts, detecting shifted types of alternative splicing, and long noncoding RNAs (lncRNAs) identification in transcriptome analysis. It also prioritizes the transcripts with a visualization framework that automatically integrates rich annotation with known genomic features. TGStools is a Python package freely available at Github.

scholarly journals Transcriptome Analysis Reveals Distinct Patterns of Long Noncoding RNAs in Heart and Plasma of Mice with Heart Failure

PLoS ONE ◽  
2013 ◽  
Vol 8 (10) ◽  
pp. e77938 ◽  
Author(s):  
Danhua Li ◽  
Geng Chen ◽  
Jichun Yang ◽  
Xiaofang Fan ◽  
Yongsheng Gong ◽  
...  
Keyword(s):  
Heart Failure ◽  
Transcriptome Analysis ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas

scholarly journals Pan-cancer transcriptome analysis reveals long noncoding RNAs with conserved function

RNA Biology ◽  
2015 ◽  
Vol 12 (6) ◽  
pp. 628-642 ◽  
Author(s):  
Christopher R Cabanski ◽  
Nicole M White ◽  
Ha X Dang ◽  
Jessica M Silva-Fisher ◽  
Corinne E Rauck ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Cancer Transcriptome ◽  
Pan Cancer
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