Deep sequencing of banana bract mosaic virus from flowering ginger (Alpinia purpurata) and development of an immunocapture RT-LAMP detection assay

2016 ◽  
Vol 161 (7) ◽  
pp. 1783-1795 ◽  
Author(s):  
Jingxin Zhang ◽  
Wayne B. Borth ◽  
Birun Lin ◽  
Kishore K. Dey ◽  
Michael J. Melzer ◽  
...  
Plant Disease ◽  
2010 ◽  
Vol 94 (7) ◽  
pp. 921-921 ◽  
Author(s):  
I.-C. Wang ◽  
D. M. Sether ◽  
M. J. Melzer ◽  
W. B. Borth ◽  
J. S. Hu

Flowering ginger, Alpinia purpurata (Vieill.) K. Schum., is a popular cut flower and tropical landscape plant in Hawaii. In Hawaii, ginger flowers, including red and pink cultivars, are grown as field crops with an estimated annual sales of more than $1.6 million (USD) in 2006 (2). In June 2009, a commercial ginger flower grower from Waimanalo, Oahu, Hawaii reported plants with symptoms that included severe mosaic and stripes on the leaves. Flowers showed significant cupping and browning and growers report a reduction in size and shelf life. Symptomatic ginger was also identified at the Lyon Arboretum in Honolulu. Double-stranded RNAs (dsRNAs) were isolated from pooled leaf samples collected from 42 symptomatic plants at two locations on the island of Oahu to further characterize the pathogen associated with the symptomatic ginger. dsRNAs of approximately 0.7, 1.1, 1.8, 2.2, and 12 kb were present in the extractions from symptomatic plants but not in extractions from asymptomatic plants. Partial cloning and sequence analysis of the dsRNA revealed 95 to 98% nucleotide identity to sequences of P1, HC-Pro, C1, 6K2, VpG, NIb, and CP genes and the 3′ untranslated region (total approximately 6 kb) of Banana bract mosaic virus (BBrMV). Total RNAs were also isolated from the symptomatic and asymptomatic plants from the Waimanalo farm and Lyon Arboretum. These RNA isolations were used in reverse transcription (RT)-PCR with primers Bract N1: 5′-GGRACATCACCAAATTTRAATGG-3′ and Bract NR: 5′-GTGTGCYTCTCTAGCCCTGTT-3′ (1), to amplify a 279-bp conserved region of the coat protein of BBrMV. Amplicons of the appropriate size were obtained from 38 of the symptomatic plants, whereas none were obtained from asymptomatic controls. RT-PCR amplicons of arbitrarily selected samples were cloned into pGEM-T Easy, sequenced, and found to be 99% identical to corresponding sequences of BBrMV. Furthermore, using double-antibody sandwich-ELISA assay and antibodies (3), we developed a system that can specifically detect BBrMV in infected flowering ginger plants and not in healthy appearing ginger. To our knowledge, this is the first report of BBrMV in flowering ginger in Hawaii. Further research is needed to determine if BBrMV infecting ginger poses a threat to banana, edible ginger, and other closely related ornamentals in Hawaii. References: (1) M. L. Iskra-Caruana et al. J. Virol. Methods 153:223, 2008. (2) Statistics of Hawaii Agriculture (2006). HDOA/USDA (NASS). 96, 2008. (3) J. E. Thomas et al. Phytopathology 87:698, 1997.


2019 ◽  
Vol 19 (1) ◽  
Author(s):  
Yongqiang Li ◽  
Fei Xia ◽  
Yixuan Wang ◽  
Chenge Yan ◽  
Anning Jia ◽  
...  

Abstract Background Cannas are popular ornamental plants and widely planted for the beautiful foliage and flower. Viral disease is a major threaten to canna horticulture industry. In the city of Beijing, mosaic disease in canna was frequently observed, but the associated causal agent and its biological characterization is still unknown. Results After small RNA deep sequencing, 36,776 contigs were assembled and 16 of them shared high sequence identities with the different proteins of Sugarcane mosaic virus (SCMV) of the size ranging from 86 to 1911 nt. The complete genome of SCMV isolate (canna) was reconstructed by sequencing all cDNA clones obtained from RT-PCR and 5′\3′ RACE amplifications. SCMV-canna isolate showed to have a full RNA genome of 9579 nt in length and to share 78% nt and 85% aa sequence identities with SCMV isolates from other hosts. The phylogenetic tree constructed based on the full genome sequence of SCMV isolates allocated separately the canna-isolate in a distinct clade, indicating a new strain. Recombination analyses demonstrated that SCMV-canna isolate was a recombinant originating from a sugarcane-infecting isolate (major parent, acc. no. AJ310103) and a maize-infecting isolate (minor parent, acc. no. AJ297628). Pathogenicity test showed SCMV-canna could cause typical symptoms of mosaic and necrosis in some tested plants with varying levels of severity but was less virulent than the isolate SCMV-BJ. Field survey showed that the virus was widely distributed. Conclusions This study identified SCMV as the major agent causing the prevalent mosaic symptom in canna plants in Beijing and its genomic and biological characterizations were further explored. All these data enriched the knowledge of the viruses infecting canna and would be helpful in effective disease management in canna.


ExRNA ◽  
2020 ◽  
Vol 2 (1) ◽  
Author(s):  
Ramamoorthy Sankaranarayanan ◽  
Sankara Naynar Palani ◽  
Abhishek Kumar ◽  
Punitha Selvakumar A. S. ◽  
Jebasingh Tennyson

2011 ◽  
Vol 40 (1) ◽  
pp. 77-85 ◽  
Author(s):  
A. Siljo ◽  
A. I. Bhat ◽  
C. N. Biju ◽  
M. N. Venugopal

2020 ◽  
Vol 156 (4) ◽  
pp. 1181-1187 ◽  
Author(s):  
Ramasamy Selvarajan ◽  
Veluswamy Balasubramanian ◽  
Perumal Priyanka ◽  
Ravikumar Manohar Jebakumar ◽  
Kanichelvam Prasanya Selvam ◽  
...  

PLoS ONE ◽  
2014 ◽  
Vol 9 (5) ◽  
pp. e97013 ◽  
Author(s):  
Zihao Xia ◽  
Jun Peng ◽  
Yongqiang Li ◽  
Ling Chen ◽  
Shuai Li ◽  
...  

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