Genomic prediction of grain yield in contrasting environments for white lupin genetic resources

2019 ◽  
Vol 39 (10-11) ◽  
Author(s):  
Paolo Annicchiarico ◽  
Nelson Nazzicari ◽  
Barbara Ferrari ◽  
Nathalie Harzic ◽  
Antonio M. Carroni ◽  
...  
Author(s):  
Maria Y. Gonzalez ◽  
Yusheng Zhao ◽  
Yong Jiang ◽  
Nils Stein ◽  
Antje Habekuss ◽  
...  

AbstractKey messageGenomic prediction with special weight of major genes is a valuable tool to populate bio-digital resource centers.AbstractPhenotypic information of crop genetic resources is a prerequisite for an informed selection that aims to broaden the genetic base of the elite breeding pools. We investigated the potential of genomic prediction based on historical screening data of plant responses against theBarley yellow mosaic virusesfor populating the bio-digital resource center of barley. Our study includes dense marker data for 3838 accessions of winter barley, and historical screening data of 1751 accessions forBarley yellow mosaic virus(BaYMV) and of 1771 accessions forBarley mild mosaic virus(BaMMV). Linear mixed models were fitted by considering combinations for the effects of genotypes, years, and locations. The best linear unbiased estimations displayed a broad spectrum of plant responses against BaYMV and BaMMV. Prediction abilities, computed as correlations between predictions and observed phenotypes of accessions, were low for the marker-assisted selection approach amounting to 0.42. In contrast, prediction abilities of genomic best linear unbiased predictions were high, with values of 0.62 for BaYMV and 0.64 for BaMMV. Prediction abilities of genomic prediction were improved by up to ~ 5% using W-BLUP, in which more weight is given to markers with significant major effects found by association mapping. Our results outline the utility of historical screening data and W-BLUP model to predict the performance of the non-phenotyped individuals in genebank collections. The presented strategy can be considered as part of the different approaches used in genebank genomics to valorize genetic resources for their usage in disease resistance breeding and research.


1994 ◽  
Vol 8 (4) ◽  
pp. 819-823 ◽  
Author(s):  
Jerry A. Ivany ◽  
Kevin V. McCully

The response of sweet white lupin to several herbicides was evaluated over five years at Charlottetown, Prince Edward Island (PEI) and two years at Cornhill, New Brunswick (NB). Excellent crop tolerance was found to the herbicides: chloramben, ethalfluralin, fluazifop-P, linuron, metobromuron, metolachlor, and trifluralin. None of the above herbicides affected crop grain yield or 1000 seed weight. Sweet white lupin was slightly injured by metribuzin at 500 g ai/ha but yields and 1000 seed weight were not affected. Higher rates of metribuzin reduced lupin yield and 1000 seed weight. Imazethapyr applied POST with 0.25% v/v Agral 90 and 1.0% v/v 28% N fertilizer caused severe crop injury and reduced lupin yields.


2000 ◽  
Vol 92 (6) ◽  
pp. 1195-1202 ◽  
Author(s):  
Steven L. Noffsinger ◽  
Christian Huyghe ◽  
Edzard Santen

2011 ◽  
Vol 26 (3) ◽  
pp. 193-199 ◽  
Author(s):  
A. Folgart ◽  
A. J. Price ◽  
E. van Santen ◽  
G. R. Wehtje

AbstractLegumes such as white lupin (Lupinus albus L.) provide a valuable nitrogen source in organic agriculture. With organic farming hectarage increasing and white lupin interest increasing in the southeastern USA due to newly released winter hardy cultivars, non-chemical weed control practices in lupin are needed. A two-year experiment was established at two locations in Alabama. Five weed control practices were evaluated: one pre-emergence (PRE)-applied herbicide (S-metolachlor), two mechanical (hand hoed) and two cultural (living mulch utilizing two black oat cultivars) weed control treatments. Fourteen weed species were encountered. S-metolachlor provided above 80% control of most weed species present in this experiment. The cultivation treatments and black oat companion crops also provided good weed control of many of the weeds encountered. Crop injury of all treatments was low on a 0 to 10 scale with 0 representing no injury: <2.0, <1.3 and <1.2 by S-metolachlor, the cultivation treatments and the black oat companion crops, respectively. Grain yield of cultivars ABL 1082, AU Alpha and AU Homer were 1540, 1130, 850 kg ha−1, respectively, when treated with the conventional treatment, S-metolachlor. Grain yield in the organic treatments was equivalent. The cultivation treatments and black oat companions were successful alternative weed control practices in white lupin production.


Author(s):  
Algė Leistrumaitė ◽  
Vanda Paplauskienė ◽  
Audronė Mašauskienė

Evaluation and Use of Genetic Resources in Spring Malting Barley Breeding in Lithuania During the period 2004-2006, grain yield stability and malt quality characteristics of 47 spring barley varieties and 55 promising breeding lines from the collection of spring barley genetic resources were investigated at the Lithuanian Institute of Agriculture (LIA). The growing conditions in 2004 were fairly normal compared with the long-term mean, and the years 2005 and 2006 were rather dry. The varieties and breeding lines tested showed from medium to high variation of grain > 2.5 mm yield (CV 11.5-34.3%) and medium variation of grain yield (CV 4.39-13.33%). However, high temperatures and drought in June of 2006 caused a low grain > 2.5 mm yield (by on average 55.0-67.8%). Promising breeding lines were characterised as having higher grain yield and extract output per ha compared with barley varieties. However, the data showed that grain grading 2.5 mm should be improved for the breeding lines. Using the software STABLE we estimated the stability of malting barley quality traits in relation to weather conditions during the crop year, genotype properties for varieties and breeding lines, as well as the interactions of variety and weather conditions. The selection of lines promising in terms of grain yield, > 2.5 mm grain yield and extract yield, was based on their ability to realise the genetic potential in various growing conditions. The highest score in integral assessment of grain yield, grain > 2.5 mm yield and extract yield was identified for the varieties Tocada', Sebastian', Scarlett' and breeding lines: 7939-1, 7661-1, and 8080-4. The varieties and breeding lines that exhibited high grain stability, high grain quality and other agronomic traits were utilised in further breeding programmes.


2010 ◽  
Vol 119 (1) ◽  
pp. 114-124 ◽  
Author(s):  
Paolo Annicchiarico ◽  
Nathalie Harzic ◽  
Antonio Melchiorre Carroni

2019 ◽  
Vol 133 (1) ◽  
pp. 201-215 ◽  
Author(s):  
Antoine Allier ◽  
Simon Teyssèdre ◽  
Christina Lehermeier ◽  
Alain Charcosset ◽  
Laurence Moreau

Crop Science ◽  
2020 ◽  
Vol 60 (1) ◽  
pp. 132-148 ◽  
Author(s):  
Sirjan Sapkota ◽  
Richard Boyles ◽  
Elizabeth Cooper ◽  
Zachary Brenton ◽  
Matthew Myers ◽  
...  

Author(s):  
P. Annicchiarico ◽  
A. M. Carroni ◽  
P. Manunza ◽  
C. Huyghe ◽  
L. Pecetti

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