Brief bioinformatics identification of cotton bZIP transcription factors family from Gossypium hirsutum, Gossypium arboreum and Gossypium raimondii

2021 ◽  
Author(s):  
Vaishali Khanale ◽  
Anjanabha Bhattacharya ◽  
Rajendra Satpute ◽  
Bharat Char
Keyword(s):  
Transcription Factors ◽  
Gossypium Hirsutum ◽  
Gossypium Arboreum ◽  
Bzip Transcription Factors ◽  
Gossypium Raimondii

scholarly journals Differentially expressed bZIP transcription factors confer multi-tolerances in Gossypium hirsutum L.

2020 ◽  
Vol 146 ◽  
pp. 569-578 ◽  
Author(s):  
Xiaoge Wang ◽  
Xuke Lu ◽  
Waqar Afzal Malik ◽  
Xiugui Chen ◽  
Junjuan Wang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Gossypium Hirsutum ◽  
Differentially Expressed ◽  
Gossypium Hirsutum L ◽  
Bzip Transcription Factors

Genome-wide analysis of the MADS-box gene family in polyploid cotton (Gossypium hirsutum) and in its diploid parental species (Gossypium arboreum and Gossypium raimondii)

2018 ◽  
Vol 127 ◽  
pp. 169-184 ◽  
Author(s):  
Sarah Muniz Nardeli ◽  
Sinara Artico ◽  
Gustavo Mitsunori Aoyagi ◽  
Stéfanie Menezes de Moura ◽  
Tatiane da Franca Silva ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Parental Species ◽  
Gossypium Arboreum ◽  
Mads Box ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Gossypium Raimondii ◽  
Mads Box Gene

Chromosomal Localization of Transcription Factors in Gossypium hirsutum

2013 ◽  
Vol 38 (8) ◽  
pp. 1361-1368 ◽  
Author(s):  
Li LI ◽  
Shun-Feng WANG ◽  
Fang LIU ◽  
Shi-Yi TANG ◽  
Zhao-Yun TAN ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Gossypium Hirsutum ◽  
Chromosomal Localization

Functional characterization of two bZIP transcription factors in Verticillium dahliae

Gene ◽  
2017 ◽  
Vol 626 ◽  
pp. 386-394 ◽  
Author(s):  
Yulin Fang ◽  
Dianguang Xiong ◽  
Longyan Tian ◽  
Chen Tang ◽  
Yonglin Wang ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Verticillium Dahliae ◽  
Functional Characterization ◽  
Bzip Transcription Factors

MULTIPLE PAR AND E4BP4 bZIP TRANSCRIPTION FACTORS IN ZEBRAFISH: DIVERSE SPATIAL AND TEMPORAL EXPRESSION PATTERNS

2010 ◽  
Vol 27 (8) ◽  
pp. 1509-1531 ◽  
Author(s):  
Zohar Ben-Moshe ◽  
Gad Vatine ◽  
Shahar Alon ◽  
Adi Tovin ◽  
Philipp Mracek ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Expression Patterns ◽  
Temporal Expression ◽  
Bzip Transcription Factors

scholarly journals Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative Upland Cotton line (Gossypium hirsutum L.)

2020 ◽  
Author(s):  
Li Wen ◽  
Wei Li ◽  
Stephen Parris ◽  
Matthew West ◽  
John Lawson ◽  
...  
Keyword(s):  
Gene Expression ◽  
Somatic Embryogenesis ◽  
Transcription Factors ◽  
Gossypium Hirsutum ◽  
Embryogenic Callus ◽  
Developmental Stages ◽  
Baby Boom ◽  
Expression Profiles ◽  
Enrichment Analysis ◽  
Study Gene Expression

Abstract • Background • Genotype independent transformation and whole plant regeneration through somatic embryogenesis relies heavily on the intrinsic ability of a genotype to regenerate. • Results • In this study, gene expression profiles of a highly regenerable Gossypium hirsutum L. cultivar, Jin668, were analyzed at two critical developmental stages during somatic embryogenesis, non-embryogenic callus (NEC) cells and embryogenic callus (EC) cells. The rate of EC formation in Jin668 is 96%. Differential gene expression analysis revealed a total of 5,333 differentially expressed genes (DEG) with 2,534 upregulated and 2,799 downregulated in EC. A total of 144 genes were unique to NEC cells and 174 genes unique to EC. Clustering and enrichment analysis identified genes upregulated in EC that function as transcription factors/DNA binding, phytohormone response, oxidative reduction, and regulators of transcription; while genes categorized in methylation pathways were downregulated. Four key transcription factors were identified based on their sharp upregulation in EC tissue; LEAFY COTYLEDON 1 (LEC1), BABY BOOM (BBM), FUSCA (FUS3) and AGAMOUS-LIKE15 with distinguishable subgenome expression bias. • Conclusions • This comparative analysis of NEC and EC transcriptomes gives new insights into the genetic underpinnings of somatic embryogenesis in cotton.

QTL mapping of “A-genome” for interspecific population of Gossypium hirsutum and Gossypium arboreum

2021 ◽  
Vol 54 (1) ◽  
Author(s):  
Wajad Nazeer ◽  
Muhammad Naeem ◽  
Maria Basheer ◽  
Jehanzaib Farooq ◽  
Abdul Latif Khan ◽  
...  
Keyword(s):  
Qtl Mapping ◽  
Gossypium Hirsutum ◽  
Gossypium Arboreum ◽  
A Genome
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