scholarly journals Targeting of proteins to the cell wall of the diatom Thalassiosira pseudonana

2021 ◽  
Vol 1 (1) ◽  
Author(s):  
Neri Fattorini ◽  
Uwe G. Maier
Keyword(s):  
Cell Wall ◽  
Molecular Level ◽  
Expression Patterns ◽  
Ecological Impact ◽  
Thalassiosira Pseudonana ◽  
Cell Wall Proteins ◽  
Cell Wall Formation ◽  
Wall Formation ◽  
Intracellular Targeting ◽  
Synchronized Cultures

AbstractDiatoms are unicellular phototrophic organisms with huge ecological impact. Characteristic for these organisms is their peculiar cell wall, which is composed of inorganic and organic components. Cell wall formation is a highly complex and orchestrated process, and in the last years has been studied intensively, also on the molecular level. Here, we review on the cell wall proteins of diatoms, with a focus on the species Thalassiosira pseudonana. We report on the expression patterns of these proteins in synchronized cultures, as well as their modifications and intracellular targeting.

scholarly journals Investigation of cell wall proteins of C. sinensis leaves by combining cell wall proteomics and N-glycoproteomics

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Yanli Liu ◽  
Linlong Ma ◽  
Dan Cao ◽  
Ziming Gong ◽  
Jing Fan ◽  
...  
Keyword(s):  
Cell Wall ◽  
Defense Response ◽  
Large Scale ◽  
Plant Cell Wall ◽  
Functional Class ◽  
Wall Structure ◽  
Cell Wall Proteins ◽  
Cell Wall Formation ◽  
Cell Wall Polysaccharides ◽  
Wall Formation

Abstract Background C. sinensis is an important economic crop with fluoride over-accumulation in its leaves, which poses a serious threat to human health due to its leaf consumption as tea. Recently, our study has indicated that cell wall proteins (CWPs) probably play a vital role in fluoride accumulation/detoxification in C. sinensis. However, there has been a lack in CWP identification and characterization up to now. This study is aimed to characterize cell wall proteome of C. sinensis leaves and to develop more CWPs related to stress response. A strategy of combined cell wall proteomics and N-glycoproteomics was employed to investigate CWPs. CWPs were extracted by sequential salt buffers, while N-glycoproteins were enriched by hydrophilic interaction chromatography method using C. sinensis leaves as a material. Afterwards all the proteins were subjected to UPLC-MS/MS analysis. Results A total of 501 CWPs and 195 CWPs were identified respectively by cell wall proteomics and N-glycoproteomics profiling with 118 CWPs in common. Notably, N-glycoproteomics is a feasible method for CWP identification, and it can enhance CWP coverage. Among identified CWPs, proteins acting on cell wall polysaccharides constitute the largest functional class, most of which might be involved in cell wall structure remodeling. The second largest functional class mainly encompass various proteases related to CWP turnover and maturation. Oxidoreductases represent the third largest functional class, most of which (especially Class III peroxidases) participate in defense response. As expected, identified CWPs are mainly related to plant cell wall formation and defense response. Conclusion This was the first large-scale investigation of CWPs in C. sinensis through cell wall proteomics and N-glycoproteomics. Our results not only provide a database for further research on CWPs, but also an insight into cell wall formation and defense response in C. sinensis.

scholarly journals A Survey on Cell wall Proteins of C. Sinensis Leaf by Combining Cell Wall Proteomic and N-Glycoproteomic Strategy

2020 ◽  
Author(s):  
yanli liu ◽  
Linlong Ma ◽  
Dan Cao ◽  
Ziming Gong ◽  
Jing Fan ◽  
...  
Keyword(s):  
Cell Wall ◽  
Defense Response ◽  
Large Scale ◽  
Plant Cell Wall ◽  
Wall Structure ◽  
Cell Wall Proteins ◽  
Cell Wall Formation ◽  
Cell Wall Polysaccharides ◽  
Wall Formation ◽  
Cell Wall Proteome

Abstract Background: Camellia sinensis is an important economic crop with fluoride over-accumulation in the leaves, which pose a serious threaten to human health due to its leave being used for making tea. Recently, our study found that cell wall proteins (CWPs) probably play a vital role in fluoride accumulation/detoxification in C. sinensis. However, CWPs identification and characterization were lacking up to now in C. sinensis. Herein, we aimed at characterizing cell wall proteome of C. sinensis leaves, to develop more CWPs related to stress response. A strategy of combined cell wall proteome and N-glycoproteome were employed to investigate CWPs. CWPs were extracted by sequential salt buffers, while N-glycoproteins were enriched by hydrophilic interaction chromatography method using C. sinensis leaves as a material, afterwards all proteins were subjected to qualitative analysis via UPLC-MS/MS.Results: 501 and 195 CWPs were identified by cell wall proteomic and N-glycoproteomics profiling, respectively, with 118 CWPs being in common. Notably, N-glycoproteome is a feasible method for CWPs identification and consequently enhance CWP coverage. Among identified CWPs, proteins acting on cell wall polysaccharides constitute the largest functional group with most of them possibly being involved in the remodeling of cell wall structure. The second abundant group encompass mainly various proteases, being considered to be related to CWPs turnover and maturation. Oxidoreductases represent the third abundance with most of them especially Class III peroxidases being known to be implicated in defense response. As expected, identified CWPs emphasized on plant cell wall formation and defense response.Conclusion: This was the first large scale survey of CWPs by cell wall proteome and N-glycoproteome in C. sinensis. The results not only provides a database that will aid deep research on CWPs, but also improve the understanding underlying cell wall formation and defense response in this important economic specie.

scholarly journals Co-expression network of secondary cell wall biogenesis genes in Eucalyptus tereticornis

2018 ◽  
Vol 67 (1) ◽  
pp. 72-78
Author(s):  
Veeramuthu Dharanishanthi ◽  
Modhumita Ghosh Dasgupta
Keyword(s):  
Cell Wall ◽  
Regulatory Networks ◽  
Secondary Cell Wall ◽  
Expression Patterns ◽  
Wood Properties ◽  
Wood Formation ◽  
Secondary Development ◽  
Cell Wall Formation ◽  
Secondary Cell Wall Formation ◽  
Wall Formation

Abstract The composition of secondary cell wall determines the indust­rially relevant wood properties in tree species. Hence, its bioge­nesis is one of the most extensively studied developmental processes during wood formation. Presently, systems genetics approach is being applied to understand the biological net­works and their interactions operational during secondary development. Genome-scale analyses of secondary cell wall formation were documented and gene regulatory networks were reported in Arabidopsis, poplar, pine, spruce, rice and sug­arcane. In the present study, the expression patterns of 2651 transcripts representing different pathways governing secon­dary development was documented across four genotypes of E. tereticornis. A co-expression network was constructed with 330 nodes and 4512 edges and the degree ranged from 11 to 53. The network documented 75 (22 %) transcription factors with high degree of interaction. Secondary wall associated NAC domain transcription factor (SND2) was identified as the top hub transcript with 53 interactions. The present study revealed that functional homologs regulating secondary cell wall formation are conserved among angiosperms and gym­nosperms.

Ethylene effects on cambial activity and cell wall formation in hypocotyls of Picea abies seedlings

1991 ◽  
Vol 82 (2) ◽  
pp. 219-224 ◽  
Author(s):  
Barbro S. M. Ingemarsson ◽  
Leif Eklund ◽  
Lennart Eliasson
Keyword(s):  
Cell Wall ◽  
Picea Abies ◽  
Cambial Activity ◽  
Cell Wall Formation ◽  
Wall Formation

Arabidopsis Callose Synthase Gene GSL8 is Required for Cell Wall Formation and Establishment and Maintenance of Quiescent Center

2014 ◽  
Vol 48 (4) ◽  
pp. 389-397
Author(s):  
Liu Lin ◽  
Quan Xianqing ◽  
Zhao Xiaomei ◽  
Huang Lihua ◽  
Feng Shangcai ◽  
...  
Keyword(s):  
Cell Wall ◽  
Quiescent Center ◽  
Cell Wall Formation ◽  
Callose Synthase ◽  
Wall Formation

scholarly journals MYB Transcription Factors and Its Regulation in Secondary Cell Wall Formation and Lignin Biosynthesis during Xylem Development

2021 ◽  
Vol 22 (7) ◽  
pp. 3560
Author(s):  
Ruixue Xiao ◽  
Chong Zhang ◽  
Xiaorui Guo ◽  
Hui Li ◽  
Hai Lu
Keyword(s):  
Cell Wall ◽  
Transcription Factors ◽  
Secondary Wall ◽  
Secondary Cell Wall ◽  
Lignin Biosynthesis ◽  
Cell Wall Formation ◽  
Long Distance ◽  
Secondary Cell Wall Formation ◽  
Myb Transcription Factors ◽  
Wall Formation

The secondary wall is the main part of wood and is composed of cellulose, xylan, lignin, and small amounts of structural proteins and enzymes. Lignin molecules can interact directly or indirectly with cellulose, xylan and other polysaccharide molecules in the cell wall, increasing the mechanical strength and hydrophobicity of plant cells and tissues and facilitating the long-distance transportation of water in plants. MYBs (v-myb avian myeloblastosis viral oncogene homolog) belong to one of the largest superfamilies of transcription factors, the members of which regulate secondary cell-wall formation by promoting/inhibiting the biosynthesis of lignin, cellulose, and xylan. Among them, MYB46 and MYB83, which comprise the second layer of the main switch of secondary cell-wall biosynthesis, coordinate upstream and downstream secondary wall synthesis-related transcription factors. In addition, MYB transcription factors other than MYB46/83, as well as noncoding RNAs, hormones, and other factors, interact with one another to regulate the biosynthesis of the secondary wall. Here, we discuss the biosynthesis of secondary wall, classification and functions of MYB transcription factors and their regulation of lignin polymerization and secondary cell-wall formation during wood formation.

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