Identification of active pathways of Chlorella protothecoides by elementary mode analysis integrated with fluxomic data

Identifying target processes for microbial electrosynthesis by elementary mode analysis

BMC Bioinformatics ◽

10.1186/s12859-014-0410-2 ◽

2014 ◽

Vol 15 (1) ◽

Cited By ~ 49

Author(s):

Frauke Kracke ◽

Jens O Krömer

Keyword(s):

Mode Analysis ◽

Elementary Mode ◽

Microbial Electrosynthesis ◽

Quantification of metabolism in Saccharomyces cerevisiae under hyperosmotic conditions using elementary mode analysis

Journal of Industrial Microbiology & Biotechnology ◽

10.1007/s10295-012-1090-4 ◽

2012 ◽

Vol 39 (6) ◽

pp. 927-941 ◽

Cited By ~ 2

Author(s):

Jignesh H. Parmar ◽

Sharad Bhartiya ◽

K. V. Venkatesh

Keyword(s):

Saccharomyces Cerevisiae ◽

Mode Analysis ◽

Elementary Mode ◽

Designing optimal cell factories: integer programming couples elementary mode analysis with regulation

BMC Systems Biology ◽

10.1186/1752-0509-6-103 ◽

2012 ◽

Vol 6 (1) ◽

pp. 103 ◽

Cited By ~ 22

Author(s):

Christian Jungreuthmayer ◽

Jürgen Zanghellini

Keyword(s):

Integer Programming ◽

Mode Analysis ◽

Elementary Mode ◽

Cell Factories

Drug target prediction using elementary mode analysis in Ascaris lumbricoides energy metabolism

Biotechnology and Bioprocess Engineering ◽

10.1007/s12257-012-0390-x ◽

2013 ◽

Vol 18 (3) ◽

pp. 491-500 ◽

Cited By ~ 6

Author(s):

K. Parvatham ◽

L. Veerakumari

Keyword(s):

Energy Metabolism ◽

Ascaris Lumbricoides ◽

Drug Target ◽

Target Prediction ◽

Mode Analysis ◽

Elementary Mode ◽

Drug Target Prediction

Integration of enzyme activities into metabolic flux distributions by elementary mode analysis

BMC Systems Biology ◽

10.1186/1752-0509-1-31 ◽

2007 ◽

Vol 1 (1) ◽

Cited By ~ 22

Author(s):

Hiroyuki Kurata ◽

Quanyu Zhao ◽

Ryuichi Okuda ◽

Kazuyuki Shimizu

Keyword(s):

Enzyme Activities ◽

Metabolic Flux ◽

Mode Analysis ◽

Elementary Mode ◽

Elementary mode analysis and metabolic flux analysis of L-glutamate biosynthesis byCorynebacterium glutamicum

Annals of Microbiology ◽

10.1007/bf03178334 ◽

2009 ◽

Vol 59 (2) ◽

pp. 317-322 ◽

Cited By ~ 10

Author(s):

Ning Chen ◽

Jun Du ◽

Hui Liu ◽

Qingyang Xu

Keyword(s):

Metabolic Flux Analysis ◽

Metabolic Flux ◽

Mode Analysis ◽

Flux Analysis ◽

Elementary Mode ◽

Glutamate Biosynthesis

Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways

Subcellular Biochemistry - Reprogramming Microbial Metabolic Pathways ◽

10.1007/978-94-007-5055-5_2 ◽

2012 ◽

pp. 21-42 ◽

Cited By ~ 7

Author(s):

Cong T. Trinh ◽

R. Adam Thompson

Keyword(s):

Pathway Analysis ◽

Metabolic Pathway ◽

Metabolic Pathways ◽

Mode Analysis ◽

Analysis Tool ◽

Elementary Mode ◽

Metabolic Pathway Analysis ◽

Pathway Analysis Tool

Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1

Biosystems ◽

10.1016/j.biosystems.2011.10.003 ◽

2012 ◽

Vol 107 (2) ◽

pp. 120-128 ◽

Cited By ~ 24

Author(s):

C.M. Flynn ◽

K.A. Hunt ◽

J.A. Gralnick ◽

F. Srienc

Keyword(s):

Shewanella Oneidensis ◽

Metabolic Model ◽

Mode Analysis ◽

Elementary Mode ◽

Dynamic Modeling of CHO Cell Metabolism Using the Hybrid Cybernetic Approach With a Novel Elementary Mode Analysis Strategy

Frontiers in Bioengineering and Biotechnology ◽

10.3389/fbioe.2020.00279 ◽

2020 ◽

Vol 8 ◽

Cited By ~ 2

Author(s):

Juan A. Martínez ◽

Dubhe B. Bulté ◽

Martha A. Contreras ◽

Laura A. Palomares ◽

Octavio T. Ramírez

Keyword(s):

Dynamic Modeling ◽

Cell Metabolism ◽

Mode Analysis ◽

Cho Cell ◽

Elementary Mode ◽

Analysis Strategy

Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress

Molecular BioSystems ◽

10.1039/c4mb00126e ◽

2014 ◽

Vol 10 (8) ◽

pp. 2090-2105 ◽

Cited By ~ 15

Author(s):

Manish Kumar ◽

Supreet Saini ◽

Kalyan Gayen

Keyword(s):

Metabolic Network ◽

Clostridium Acetobutylicum ◽

External Stress ◽

Mode Analysis ◽

Elementary Mode ◽

Strict Anaerobe

Clostridium acetobutylicumis a strict anaerobe which exhibits two distinct steps in its metabolic network.