Structural basis of Rad53 kinase activation by dimerization and activation segment exchange

2014 ◽  
Vol 26 (9) ◽  
pp. 1825-1836 ◽  
Author(s):  
Leanne E. Wybenga-Groot ◽  
Cynthia S. Ho ◽  
Frédéric D. Sweeney ◽  
Derek F. Ceccarelli ◽  
C. Jane McGlade ◽  
...  
eLife ◽  
2016 ◽  
Vol 5 ◽  
Author(s):  
Christina Kiel ◽  
Hannah Benisty ◽  
Veronica Lloréns-Rico ◽  
Luis Serrano

Many driver mutations in cancer are specific in that they occur at significantly higher rates than – presumably – functionally alternative mutations. For example, V600E in the BRAF hydrophobic activation segment (AS) pocket accounts for >95% of all kinase mutations. While many hypotheses tried to explain such significant mutation patterns, conclusive explanations are lacking. Here, we use experimental and in silico structure-energy statistical analyses, to elucidate why the V600E mutation, but no other mutation at this, or any other positions in BRAF’s hydrophobic pocket, is predominant. We find that BRAF mutation frequencies depend on the equilibrium between the destabilization of the hydrophobic pocket, the overall folding energy, the activation of the kinase and the number of bases required to change the corresponding amino acid. Using a random forest classifier, we quantitatively dissected the parameters contributing to BRAF AS cancer frequencies. These findings can be applied to genome-wide association studies and prediction models.


2017 ◽  
Vol 36 (15) ◽  
pp. 2251-2262 ◽  
Author(s):  
Denise A McGrath ◽  
Bre‐Anne Fifield ◽  
Aimee H Marceau ◽  
Sarvind Tripathi ◽  
Lisa A Porter ◽  
...  

1996 ◽  
Vol 3 (8) ◽  
pp. 696-700 ◽  
Author(s):  
Alicia A. Russo ◽  
Philip D. Jeffrey ◽  
Nikola P. Pavletich

2020 ◽  
Vol 39 (19) ◽  
Author(s):  
Iván Acebrón ◽  
Ricardo D Righetto ◽  
Christina Schoenherr ◽  
Svenja Buhr ◽  
Pilar Redondo ◽  
...  

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Ioannis Galdadas ◽  
Luca Carlino ◽  
Richard A Ward ◽  
Samantha J Hughes ◽  
Shozeb Haider ◽  
...  

Mutations within the kinase domain of the epidermal growth factor receptor (EGFR) are common oncogenic driver events in non-small cell lung cancer. Although the activation of EGFR in normal cells is primarily driven by growth-factor-binding-induced dimerization, mutations on different exons of the kinase domain of the receptor have been found to affect the equilibrium between its active and inactive conformations giving rise to growth-factor-independent kinase activation. Using molecular dynamics simulations combined with enhanced sampling techniques, we compare here the conformational landscape of the monomers and homodimers of the wild-type and mutated forms of EGFR _ELREA and L858R, as well as of two exon 20 insertions, D770-N771insNPG, and A763-Y764insFQEA. The differences in the conformational energy landscapes are consistent with multiple mechanisms of action including the regulation of the hinge motion, the stabilization of the dimeric interface, and local unfolding transitions. Overall, a combination of different effects is pronounced in the different mutants and leads to the observed aberrant signaling.


Structure ◽  
2018 ◽  
Vol 26 (8) ◽  
pp. 1101-1115.e6 ◽  
Author(s):  
Shawn Xiong ◽  
Kristina Lorenzen ◽  
Amber L. Couzens ◽  
Catherine M. Templeton ◽  
Dushyandi Rajendran ◽  
...  

Open Biology ◽  
2012 ◽  
Vol 2 (11) ◽  
pp. 120136 ◽  
Author(s):  
Richard Bayliss ◽  
Andrew Fry ◽  
Tamanna Haq ◽  
Sharon Yeoh

During mitosis, human cells exhibit a peak of protein phosphorylation that alters the behaviour of a significant proportion of proteins, driving a dramatic transformation in the cell's shape, intracellular structures and biochemistry. These mitotic phosphorylation events are catalysed by several families of protein kinases, including Auroras, Cdks, Plks, Neks, Bubs, Haspin and Mps1/TTK. The catalytic activities of these kinases are activated by phosphorylation and through protein–protein interactions. In this review, we summarize the current state of knowledge of the structural basis of mitotic kinase activation mechanisms. This review aims to provide a clear and comprehensive primer on these mechanisms to a broad community of researchers, bringing together the common themes, and highlighting specific differences. Along the way, we have uncovered some features of these proteins that have previously gone unreported, and identified unexplored questions for future work. The dysregulation of mitotic kinases is associated with proliferative disorders such as cancer, and structural biology will continue to play a critical role in the development of chemical probes used to interrogate disease biology and applied to the treatment of patients.


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