Functional and taxonomic (α and β) diversity patterns of macrobenthic communities along a depth gradient (19–2639 m): A case study from the southern Indian continental margin

2020 ◽  
Vol 159 ◽  
pp. 103250
Author(s):  
Sanitha K. Sivadas ◽  
Dharmendra Pratap Singh ◽  
Rajeev Saraswat
2009 ◽  
Vol 75 (23) ◽  
pp. 7537-7541 ◽  
Author(s):  
Patrick D. Schloss ◽  
Sarah L. Westcott ◽  
Thomas Ryabin ◽  
Justine R. Hall ◽  
Martin Hartmann ◽  
...  

ABSTRACT mothur aims to be a comprehensive software package that allows users to use a single piece of software to analyze community sequence data. It builds upon previous tools to provide a flexible and powerful software package for analyzing sequencing data. As a case study, we used mothur to trim, screen, and align sequences; calculate distances; assign sequences to operational taxonomic units; and describe the α and β diversity of eight marine samples previously characterized by pyrosequencing of 16S rRNA gene fragments. This analysis of more than 222,000 sequences was completed in less than 2 h with a laptop computer.


Hydrobiologia ◽  
2020 ◽  
Vol 847 (11) ◽  
pp. 2417-2431
Author(s):  
T. G. Pellegrini ◽  
L. D. B. Faria ◽  
R. L. Ferreira

2018 ◽  
Vol 30 (0) ◽  
Author(s):  
Hugo Marques ◽  
João Henrique Pinheiro Dias ◽  
Igor Paiva Ramos

Abstract Aim β diversity was used as an indicator to test the hypothesis that a fishway can increase river connectivity, as a reduction in the value of this metric indicates greater similarity among fish assemblages. Methods Quarterly sampling was performed with gillnets upstream and downstream of the Porto Primavera dam, Upper Paraná Basin, before the opening of the fishway between February 1999 and May 2001, and between February 2003 and May 2005 with the fishway in operation (10 samples per period/site). The correlation between the fish assemblages and sites was verified by applying two Mantel tests (downstream versus upstream before and one equivalent after the fishway) using the distance matrices generated by the Bray‐Curtis index. The β diversity between downstream and upstream was calculated using the Sørensen index for each sample for the comparison of such values before and after the operation of the fishway, which were tested with Asymptotic Wilcoxon-Mann-Whitney Test. To summarize changes in the structure of the fish assemblages between the sites and periods nonmetric multidimensional scaling (NMDS) was applied based on Bray-Curtis dissimilarities, using multi-response permutation procedures (MRPP). Results The Mantel tests showed no correlation between the upstream and downstream assemblages before the operation of the fishway but greater correlation after. β diversity was lower after than before the fishway, representing an increase in similarity between downstream and upstream with the fishway. MRPP analysis indicated that the fish assemblages between the sites differed more than was expected by chance, with smaller divergence between the sampling sites after the fishway (A = 0.08) than before it opened (A = 0.09). Conclusions Although fishways remain an incipient and controversial theme for neotropical fish, the Porto Primavera fishway appears to be effective in terms of the restoration of connectivity.


2015 ◽  
Vol 282 (1809) ◽  
pp. 20142630 ◽  
Author(s):  
Jordan G. Okie ◽  
David J. Van Horn ◽  
David Storch ◽  
John E. Barrett ◽  
Michael N. Gooseff ◽  
...  

The causes of biodiversity patterns are controversial and elusive due to complex environmental variation, covarying changes in communities, and lack of baseline and null theories to differentiate straightforward causes from more complex mechanisms. To address these limitations, we developed general diversity theory integrating metabolic principles with niche-based community assembly. We evaluated this theory by investigating patterns in the diversity and distribution of soil bacteria taxa across four orders of magnitude variation in spatial scale on an Antarctic mountainside in low complexity, highly oligotrophic soils. Our theory predicts that lower temperatures should reduce taxon niche widths along environmental gradients due to decreasing growth rates, and the changing niche widths should lead to contrasting α- and β-diversity patterns. In accord with the predictions, α-diversity, niche widths and occupancies decreased while β-diversity increased with increasing elevation and decreasing temperature. The theory also successfully predicts a hump-shaped relationship between α-diversity and pH and a negative relationship between α-diversity and salinity. Thus, a few simple principles explained systematic microbial diversity variation along multiple gradients. Such general theory can be used to disentangle baseline effects from more complex effects of temperature and other variables on biodiversity patterns in a variety of ecosystems and organisms.


2018 ◽  
Vol 16 ◽  
pp. e00433 ◽  
Author(s):  
Mindy M. Syfert ◽  
Neil A. Brummitt ◽  
David A. Coomes ◽  
Nadia Bystriakova ◽  
Matthew J. Smith

Water ◽  
2020 ◽  
Vol 12 (7) ◽  
pp. 1984
Author(s):  
Anthi Oikonomou ◽  
Konstantinos Stefanidis

Disentangling the main drivers of species richness and community composition is a central theme in ecology. Freshwater biodiversity patterns have been poorly explored; yet, it has been shown that different freshwater biota have different, often contrasting responses to environmental gradients. In this study, we investigated the relative contribution of geographical and environmental (habitat-, climate- and water quality-related) factors/gradients in shaping the α- and β-diversity patterns of macrophytes and fish in sixteen natural freshwater lakes of an unexplored Balkan biodiversity hotspot, the Southern Balkan Peninsula. We employed generalized linear modeling to identify drivers of α-diversity, and generalized dissimilarity modeling to explore commonalities and dissimilarities of among-biota β-diversity. Species richness of both biota was significantly associated with lake surface area, whereas macrophytes had an inverse response to altitude, compared to fish. Both species turnover and nestedness significantly contributed to the total β-diversity of macrophytes. In contrast, species turnover was the most significant contributor to the total fish β-diversity. We found that the compositional variation of macrophytes is primarily limited by dispersal and ultimately shaped by environmental drivers, resulting in spatially structured assemblages. Fish communities were primarily shaped by altitude, highlighting the role of species sorting. We conclude that among-biota diversity patterns are shaped by different/contrasting factors, and, thus, effective/sustainable conservation strategies should encompass multiple aquatic biota.


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