RNA analysis of inner ear cells from formalin fixed paraffin embedded (FFPE) archival human temporal bone section using laser microdissection – A technical report

2013 ◽  
Vol 302 ◽  
pp. 26-31 ◽  
Author(s):  
Yurika Kimura ◽  
Sachiho Kubo ◽  
Hiroko Koda ◽  
Kazuhiro Shigemoto ◽  
Motoji Sawabe ◽  
...  
2016 ◽  
Vol 22 (4) ◽  
pp. 425-430 ◽  
Author(s):  
Christine Surrette ◽  
David Shoudy ◽  
Alex Corwin ◽  
Wei Gao ◽  
Maria I. Zavodszky ◽  
...  

We present a mesodissection platform that retains the advantages of laser-based dissection instrumentation with the speed and ease of manual dissection. Tissue dissection in clinical laboratories is often performed by manually scraping a physician-selected region from standard glass slide mounts. In this manner, costs associated with dissection remain low, but spatial resolution is compromised. In contrast, laser microdissection methods maintain spatial resolution that matches the requirements for analysis of important tissue heterogeneity but remains costly and labor intensive. We demonstrate a microfluidic tool for rapid extraction of histological regions of interest from formalin-fixed paraffin-embedded tissue, which uses a simple and automated method that is compatible with most downstream enzymatic reactions, including protocols used for next-generation DNA sequencing.


2018 ◽  
Vol 26 (8) ◽  
pp. 1143-1150 ◽  
Author(s):  
Anne ML Jansen ◽  
Heleen M van der Klift ◽  
Marieke AE Roos ◽  
Jaap DH van Eendenburg ◽  
Carli MJ Tops ◽  
...  

Cancers ◽  
2020 ◽  
Vol 12 (4) ◽  
pp. 943 ◽  
Author(s):  
Jeong Il Yu ◽  
Hee Chul Park ◽  
Jeeyun Lee ◽  
Changhoon Choi ◽  
Won Ki Kang ◽  
...  

Background: The purpose of this study was to evaluate the clinical outcomes following postoperative chemotherapy (XP) versus chemoradiotherapy (XP-RT) according to mesenchymal subtype based on RNA sequencing in gastric cancer (GC) in a cohort of the Adjuvant chemoRadioTherapy In Stomach Tumor (ARTIST) trial. Methods: Of the 458 patients enrolled in the ARTIST trial, formalin-fixed, paraffin-embedded (FFPE) specimens were available from 106 (23.1%) patients for RNA analysis. The mesenchymal subtype was classified according to a previously reported 71-gene MSS/EMT signature using the NanoString assay. Results: Of the 106 patients analyzed (50 in XP arm, 56 in XP-RT arm), 36 (34.0%) patients were categorized as mesenchymal subtype by NanoString assay. Recurrence-free survival (RFS, p = 0.009, hazard ratio (HR) = 2.11, 95% confidence interval (CI): 1.21–3.70) and overall survival (OS, p = 0.003, HR = 2.28, 95% CI: 1.31–3.96) were significantly lower in the mesenchymal subtype than in the non-mesenchymal subtype. In terms of post-operative radiotherapy (RT), mesenchymal subtype was not an independent variable to predict RFS or OS regardless to the assigned arm (XP with or without RT) in this patient cohort. However, there was a trend in the adjuvant XP arm, which showed higher OS than the XP-RT arm for the mesenchymal subtype and lower OS than the XP-RT arm for the non-mesenchymal subtype. Conclusions: We could not determine any significant differences between the mesenchymal and non-mesenchymal subtypes with respect to the effects of adjuvant XP with or without RT in gastric cancer following curative surgery.


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