Monitoring grass nutrients and biomass as indicators of rangeland quality and quantity using random forest modelling and WorldView-2 data

Author(s):  
Abel Ramoelo ◽  
M.A. Cho ◽  
R. Mathieu ◽  
S. Madonsela ◽  
R. van de Kerchove ◽  
...  
Author(s):  
Eduarda M.O. Silveira ◽  
Sérgio Henrique G. Silva ◽  
Fausto W. Acerbi-Junior ◽  
Mônica C. Carvalho ◽  
Luis Marcelo T. Carvalho ◽  
...  

2020 ◽  
Vol 262 ◽  
pp. 114284 ◽  
Author(s):  
Anna Font ◽  
Anja H. Tremper ◽  
Chun Lin ◽  
Max Priestman ◽  
Daniel Marsh ◽  
...  

2021 ◽  
Author(s):  
Olivia M Rifai ◽  
James Longden ◽  
Judi O'Shaughnessy ◽  
Michael DE Sewell ◽  
Karina McDade ◽  
...  

Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are regarded as two ends of a pathogenetic spectrum, termed ALS-frontotemporal spectrum disorder (ALS-FTSD). However, it is currently difficult to predict where on the spectrum an individual will lie, especially for patients with C9orf72 hexanucleotide repeat expansions (HRE), a mutation associated with both ALS and FTD. It has been shown that both inflammation and protein misfolding influence aspects of ALS and ALS-FTSD disease pathogenesis, such as the manifestation or severity of motor or cognitive symptoms. Previous studies have highlighted markers which may influence C9orf72-associated disease presentation in a targeted fashion, though there has yet to be a systematic and quantitative assessment of common immunohistochemical markers to investigate the significance of these pathways in an unbiased manner. Here we report the first extensive digital pathological assessment with random forest modelling of pathological markers often used in neuropathology practice. This study profiles glial activation and protein misfolding in a cohort of deeply clinically profiled post-mortem tissue from patients with a C9orf72 HRE, who either met the criteria for a diagnosis of ALS or ALS-FTSD. We show that microglial immunohistochemical staining features, both morphological and spatial, are the best independent classifiers of disease status and that clinicopathological associations exist between microglial activation status and cognitive dysfunction in ALS-FTSD patients with C9orf72 HRE. Furthermore, we show that spatially resolved changes in FUS staining are also an accurate predictor of disease status, implying that liquid-liquid phase shift of this aggregation-prone RNA-binding protein may be important in ALS caused by a C9orf72 HRE. Our findings provide further support to the hypothesis of dysfunctional immune regulation and proteostasis in the pathogenesis of C9orf72 ALS and provide a framework for digital analysis of commonly used neuropathological stains as a tool to enrich our understanding of clinicopathological associations between cohorts.


Author(s):  
Darren Turner ◽  
Arko Lucieer ◽  
Zbyněk Malenovský ◽  
Diana King ◽  
Sharon A. Robinson

2020 ◽  
Vol 12 (7) ◽  
pp. 1210 ◽  
Author(s):  
Giorgos Mallinis ◽  
Irene Chrysafis ◽  
Georgios Korakis ◽  
Eleanna Pana ◽  
Apostolos P. Kyriazopoulos

Earth observation data can provide important information for tree species diversity mapping and monitoring. The relatively recent advances in remote sensing data characteristics and processing systems elevate the potential of satellite imagery for providing accurate, timely, consistent, and robust spatially explicit estimates of tree species diversity over forest ecosystems. This study was conducted in Northern Pindos National Park, the largest terrestrial park in Greece and aimed to assess the potential of four satellite sensors with different instrumental characteristics, for the estimation of tree diversity. Through field measurements, we originally quantified two diversity indices, namely the Shannon diversity index (H’) and Simpson’s diversity (D1). Random forest regression models were developed for associating remotely sensed spectral signal with tree species diversity within the area. The models generated from the use of the WorldView-2 image were the most accurate with a coefficient of determination of up to 0.44 for H’ and 0.37 for D1. The Sentinel-2 -based models of tree species diversity performed slightly worse, but were better than the Landsat-8 and RapidEye models. The coefficient of variation quantifying internal variability of spectral values within each plot provided little or no usage for improving the modelling accuracy. Our results suggest that very-high-spatial-resolution imagery provides the most important information for the assessment of tree species diversity in heterogeneous Mediterranean ecosystems.


Sign in / Sign up

Export Citation Format

Share Document