Interactive visual analysis and classification of hyperspectral imaging data

2018 ◽  
Vol 26 ◽  
pp. 13-21 ◽  
Author(s):  
Anatoliy Antonov ◽  
Lars Linsen
Information ◽  
2020 ◽  
Vol 11 (12) ◽  
pp. 575
Author(s):  
Muhammad Jawad ◽  
Jens Soltwisch ◽  
Klaus Dreisewerd ◽  
Lars Linsen

Mass spectrometry imaging (MSI) is an imaging technique used in analytical chemistry to study the molecular distribution of various compounds at a micro-scale level. For each pixel, MSI stores a mass spectrum obtained by measuring signal intensities of thousands of mass-to-charge ratios (m/z-ratios), each linked to an individual molecular ion species. Traditional analysis tools focus on few individual m/z-ratios, which neglects most of the data. Recently, clustering methods of the spectral information have emerged, but faithful detection of all relevant image regions is not always possible. We propose an interactive visual analysis approach that considers all available information in coordinated views of image and spectral space visualizations, where the spectral space is treated as a multi-dimensional space. We use non-linear embeddings of the spectral information to interactively define clusters and respective image regions. Of particular interest is, then, which of the molecular ion species cause the formation of the clusters. We propose to use linear embeddings of the clustered data, as they allow for relating the projected views to the given dimensions. We document the effectiveness of our approach in analyzing matrix-assisted laser desorption/ionization (MALDI-2) imaging data with ground truth obtained from histological images.


2021 ◽  
Vol 13 (8) ◽  
pp. 1562
Author(s):  
Xiangyu Ge ◽  
Jianli Ding ◽  
Xiuliang Jin ◽  
Jingzhe Wang ◽  
Xiangyue Chen ◽  
...  

Unmanned aerial vehicle (UAV)-based hyperspectral remote sensing is an important monitoring technology for the soil moisture content (SMC) of agroecological systems in arid regions. This technology develops precision farming and agricultural informatization. However, hyperspectral data are generally used in data mining. In this study, UAV-based hyperspectral imaging data with a resolution o 4 cm and totaling 70 soil samples (0–10 cm) were collected from farmland (2.5 × 104 m2) near Fukang City, Xinjiang Uygur Autonomous Region, China. Four estimation strategies were tested: the original image (strategy I), first- and second-order derivative methods (strategy II), the fractional-order derivative (FOD) technique (strategy III), and the optimal fractional order combined with the optimal multiband indices (strategy IV). These strategies were based on the eXtreme Gradient Boost (XGBoost) algorithm, with the aim of building the best estimation model for agricultural SMC in arid regions. The results demonstrated that FOD technology could effectively mine information (with an absolute maximum correlation coefficient of 0.768). By comparison, strategy IV yielded the best estimates out of the methods tested (R2val = 0.921, RMSEP = 1.943, and RPD = 2.736) for the SMC. The model derived from the order of 0.4 within strategy IV worked relatively well among the different derivative methods (strategy I, II, and III). In conclusion, the combination of FOD technology and the optimal multiband indices generated a highly accurate model within the XGBoost algorithm for SMC estimation. This research provided a promising data mining approach for UAV-based hyperspectral imaging data.


Author(s):  
Phawis Thammasorn ◽  
Wanpracha A. Chaovalitwongse ◽  
Daniel S. Hippe ◽  
Landon S. Wootton ◽  
Eric C. Ford ◽  
...  

Author(s):  
Hamid Mansoor ◽  
Walter Gerych ◽  
Abdulaziz Alajaji ◽  
Luke Buquicchio ◽  
Kavin Chandrasekaran ◽  
...  

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