scholarly journals imzML — A common data format for the flexible exchange and processing of mass spectrometry imaging data

2012 ◽  
Vol 75 (16) ◽  
pp. 5106-5110 ◽  
Author(s):  
Thorsten Schramm ◽  
Zoë Hester ◽  
Ivo Klinkert ◽  
Jean-Pierre Both ◽  
Ron M.A. Heeren ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Mass Spectrometry Imaging ◽  
Imaging Data ◽  
Data Format

scholarly journals Raman2imzML converts Raman imaging data into the standard mass spectrometry imaging format

2020 ◽  
Vol 21 (1) ◽  
Author(s):  
Stefania Alexandra Iakab ◽  
Lluc Sementé ◽  
María García-Altares ◽  
Xavier Correig ◽  
Pere Ràfols
Keyword(s):  
Mass Spectrometry ◽  
Open Source ◽  
Open Source Software ◽  
Multimodal Imaging ◽  
Mass Spectrometry Imaging ◽  
Raman Imaging ◽  
Imaging Analysis ◽  
Imaging Data ◽  
Data Format ◽  
Computational Tools

Abstract Background Multimodal imaging that combines mass spectrometry imaging (MSI) with Raman imaging is a rapidly developing multidisciplinary analytical method used by a growing number of research groups. Computational tools that can visualize and aid the analysis of datasets by both techniques are in demand. Results Raman2imzML was developed as an open-source converter that transforms Raman imaging data into imzML, a standardized common data format created and adopted by the mass spectrometry community. We successfully converted Raman datasets to imzML and visualized Raman images using open-source software designed for MSI applications. Conclusion Raman2imzML enables both MSI and Raman images to be visualized using the same file format and the same software for a straightforward exploratory imaging analysis.

scholarly journals Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis

2018 ◽  
Vol 29 (12) ◽  
pp. 2467-2470 ◽  
Author(s):  
Måns Ekelöf ◽  
Kenneth P. Garrard ◽  
Rika Judd ◽  
Elias P. Rosen ◽  
De-Yu Xie ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Analysis ◽  
Image Recognition ◽  
Digital Image ◽  
Mass Spectrometry Imaging ◽  
Imaging Data

scholarly journals massPix: an R package for annotation and interpretation of mass spectrometry imaging data for lipidomics

Metabolomics ◽  
2017 ◽  
Vol 13 (11) ◽  
Author(s):  
Nicholas J. Bond ◽  
Albert Koulman ◽  
Julian L. Griffin ◽  
Zoe Hall
Keyword(s):  
Mass Spectrometry ◽  
Mass Spectrometry Imaging ◽  
R Package ◽  
Imaging Data
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