Fructose-1,6-bisphosphatase from a hyper-thermophilic bacterium Thermotoga maritima: Characterization, metabolite stability, and its implications

2010 ◽  
Vol 45 (12) ◽  
pp. 1882-1887 ◽  
Author(s):  
Suwan Myung ◽  
Yiran Wang ◽  
Y.-H. Percival Zhang
2018 ◽  
Author(s):  
Keni Vidilaseris ◽  
Alexandros Kiriazis ◽  
Ainoleena Turku ◽  
Ayman Khattab ◽  
Niklas G. Johansson ◽  
...  

AbstractMembrane-bound pyrophosphatases are homodimeric integral membrane proteins that hydrolyse pyrophosphate into orthophosphates, coupled to the active transport of protons or sodium ions across membranes. They are important in the life cycle of bacteria, archaea, plants, and protist parasites, but no homologous proteins exist in vertebrates, making them a promising drug target. Here, we report the first non-phosphorous allosteric inhibitor (Ki of 1.8 ± 0.3 μM) of the thermophilic bacterium Thermotoga maritima membrane-bound pyrophosphatase and its bound structure at 3.7 Å resolution together with the substrate analogue imidodiphosphate. The unit cell contains two protein homodimers, each binding a single inhibitor dimer near the exit channel, creating a hydrophobic clamp that inhibits the movement of β-strand 1–2 during pumping, and thus preventing the hydrophobic gate from opening. This asymmetry of inhibitor binding with respect to each homodimer provide the first clear demonstration of asymmetry in the catalytic cycle of membrane-bound pyrophosphatases.


2014 ◽  
Vol 70 (a1) ◽  
pp. C439-C439
Author(s):  
Patrycja Olszynska ◽  
Monika Imierska ◽  
Justyna Czyrko ◽  
Krzysztof Brzezinski

S-adenosyl-L-homocysteine hydrolase (SAHase) catalyzes the reversible breakdown of S-adenosyl-L-homocysteine (SAH) to adenosine (Ado) and homocysteine (Hcy). SAH is formed in methylation reactions that utilize S-adenosyl-L-methionine (SAM) as a methyl donor. By removing the SAH byproduct, SAHase serves as a regulator of SAM-dependent biological methylation reactions.[1] Thermotoga maritima is a thermophilic bacterium, but its genome carries a number of archeal genes as a consequence of massive gene transfers related to adaptation to the high-temperature environment.[2] sahh is one of many genes of archeal origin found in T. maritima. Crystals of recombinant SAHase from T. maritima in complex with adenosine were obtained by the hanging drop vapor diffusion method. The crystals are monoclinic, space group C2, with a = 120.4, b =105.5, c = 85.5 Å, β=108.80and diffract X-rays to 1.80 Å. The crystal contains two protein molecules in the asymmetric unit. The enzyme is active as a homotetramer with a molecular weight of about 180 kDa. The crystal contains two protomers in the asymmetric unit, which exist in both, open and closed conformations. The complete tetrameric enzyme molecule is generated in the crystal lattice through the operation of the crystallographic twofold axis. In contrast to other SAHase structures, only two subunits contain a tightly bound NAD+ cofactor, however their closed conformations exclude the possibility of substrate binding. The other two subunits are in open conformation and bind adenosine molecule in the cofactor binding site. Herein, lack of the cofactor molecule excludes the possibility of an enzymatic reaction. In contrast to other SAHases, the C-terminal domain from adjacent protomer does not participate in the binding of the NAD+. Results presented here indicate a different structural organization of archeal type SAHases.


2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Martin Kuhns ◽  
Dragan Trifunović ◽  
Harald Huber ◽  
Volker Müller

Abstractrnf genes are widespread in bacteria and biochemical and genetic data are in line with the hypothesis that they encode a membrane-bound enzyme that oxidizes reduced ferredoxin and reduces NAD and vice versa, coupled to ion transport across the cytoplasmic membrane. The Rnf complex is of critical importance in many bacteria for energy conservation but also for reverse electron transport to drive ferredoxin reduction. However, the enzyme has never been purified and thus, ion transport could not be demonstrated yet. Here, we have purified the Rnf complex from the anaerobic, fermenting thermophilic bacterium Thermotoga maritima and show that is a primary Na+ pump. These studies provide the proof that the Rnf complex is indeed an ion (Na+) translocating, respiratory enzyme. Together with a Na+-F1FO ATP synthase it builds a simple, two-limb respiratory chain in T. maritima. The physiological role of electron transport phosphorylation in a fermenting bacterium is discussed.


2015 ◽  
Vol 190 (2) ◽  
pp. 135-142 ◽  
Author(s):  
Yingying Zheng ◽  
Chun-Chi Chen ◽  
Tzu-Ping Ko ◽  
Xiansha Xiao ◽  
Yunyun Yang ◽  
...  

IUCrJ ◽  
2021 ◽  
Vol 8 (3) ◽  
Author(s):  
Timothy Wiryaman ◽  
Navtej Toor

Protein nanocompartments are widespread in bacteria and archaea, but their functions are not yet well understood. Here, the cryo-EM structure of a nanocompartment from the thermophilic bacterium Thermotoga maritima is reported at 2.0 Å resolution. The high resolution of this structure shows that interactions in the E-loop domain may be important for the thermostability of the nanocompartment assembly. Also, the channels at the fivefold axis, threefold axis and dimer interface are assessed for their ability to transport iron. Finally, an unexpected flavin ligand was identified on the exterior of the shell, indicating that this nanocompartment may also play a direct role in iron metabolism.


2019 ◽  
Vol 5 (5) ◽  
pp. eaav7574 ◽  
Author(s):  
Keni Vidilaseris ◽  
Alexandros Kiriazis ◽  
Ainoleena Turku ◽  
Ayman Khattab ◽  
Niklas G. Johansson ◽  
...  

Membrane-bound pyrophosphatases are homodimeric integral membrane proteins that hydrolyze pyrophosphate into orthophosphates, coupled to the active transport of protons or sodium ions across membranes. They are important in the life cycle of bacteria, archaea, plants, and parasitic protists, but no homologous proteins exist in vertebrates, making them a promising drug target. Here, we report the first nonphosphorus allosteric inhibitor of the thermophilic bacterium Thermotoga maritima membrane-bound pyrophosphatase and its bound structure together with the substrate analog imidodiphosphate. The unit cell contains two protein homodimers, each binding a single inhibitor dimer near the exit channel, creating a hydrophobic clamp that inhibits the movement of β-strand 1–2 during pumping, and thus prevents the hydrophobic gate from opening. This asymmetry of inhibitor binding with respect to each homodimer provides the first clear structural demonstration of asymmetry in the catalytic cycle of membrane-bound pyrophosphatases.


2006 ◽  
Vol 400 (2) ◽  
pp. 359-366 ◽  
Author(s):  
F. Grant Pearce ◽  
Matthew A. Perugini ◽  
Hannah J. Mckerchar ◽  
Juliet A. Gerrard

DHDPS (dihydrodipicolinate synthase) catalyses the branch point in lysine biosynthesis in bacteria and plants and is feedback inhibited by lysine. DHDPS from the thermophilic bacterium Thermotoga maritima shows a high level of heat and chemical stability. When incubated at 90 °C or in 8 M urea, the enzyme showed little or no loss of activity, unlike the Escherichia coli enzyme. The active site is very similar to that of the E. coli enzyme, and at mesophilic temperatures the two enzymes have similar kinetic constants. Like other forms of the enzyme, T. maritima DHDPS is a tetramer in solution, with a sedimentation coefficient of 7.2 S and molar mass of 133 kDa. However, the residues involved in the interface between different subunits in the tetramer differ from those of E. coli and include two cysteine residues poised to form a disulfide bond. Thus the increased heat and chemical stability of the T. maritima DHDPS enzyme is, at least in part, explained by an increased number of inter-subunit contacts. Unlike the plant or E. coli enzyme, the thermophilic DHDPS enzyme is not inhibited by (S)-lysine, suggesting that feedback control of the lysine biosynthetic pathway evolved later in the bacterial lineage.


2000 ◽  
Vol 110 (3) ◽  
pp. 330-341 ◽  
Author(s):  
Angelika Reichert ◽  
Elisabeth Baalmann ◽  
Susanne Vetter ◽  
Jan E. Backhausen ◽  
Renate Scheibe

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