Mapping of quantitative trait loci corroborates independent genetic control of apple size and shape

2014 ◽  
Vol 174 ◽  
pp. 126-132 ◽  
Author(s):  
Yuansheng Chang ◽  
Rui Sun ◽  
Huanhuan Sun ◽  
Yongbo Zhao ◽  
Yuepeng Han ◽  
...  
2007 ◽  
pp. 171-201 ◽  
Author(s):  
Helen Ougham ◽  
Ian Armstead ◽  
Catherine Howarth ◽  
Isaac Galyuon ◽  
Iain Donnison ◽  
...  

2017 ◽  
Author(s):  
Fanny Bonnafous ◽  
Ghislain Fievet ◽  
Nicolas Blanchet ◽  
Marie-Claude Boniface ◽  
Sébastien Carrère ◽  
...  

AbstractGenome-wide association studies are a powerful and widely used tool to decipher the genetic control of complex traits. One of the main challenges for hybrid crops, such as maize or sunflower, is to model the hybrid vigor in the linear mixed models, considering the relatedness between individuals. Here, we compared two additive and three non-additive association models for their ability to identify genomic regions associated with flowering time in sunflower hybrids. A panel of 452 sunflower hybrids, corresponding to incomplete crossing between 36 male lines and 36 female lines, was phenotyped in five environments and genotyped for 2,204,423 SNPs. Intra-locus effects were estimated in multi-locus models to detect genomic regions associated with flowering time using the different models. Thirteen quantitative trait loci were identified in total, two with both model categories and one with only non-additive models. A quantitative trait loci on LG09, detected by both the additive and non-additive models, is located near a GAI homolog and is presented in detail. Overall, this study shows the added value of non-additive modeling of allelic effects for identifying genomic regions that control traits of interest and that could participate in the heterosis observed in hybrids.


2016 ◽  
Vol 42 (9) ◽  
pp. 1309
Author(s):  
Qiang CHEN ◽  
Long YAN ◽  
Ying-Ying DENG ◽  
Er-Ning XIAO ◽  
Bing-Qiang LIU ◽  
...  

2021 ◽  
Vol 12 ◽  
Author(s):  
F. Daniela Rodriguez-Zaccaro ◽  
Isabelle M. Henry ◽  
Andrew Groover

During secondary growth, forest trees can modify the anatomy of the wood produced by the vascular cambium in response to environmental conditions. Notably, the trees of the model angiosperm genus, Populus, reduce the risk of cavitation and hydraulic failure under water stress by producing water-conducting vessel elements with narrow lumens, which are more numerous and more interconnected with each other. Here, we determined the genetic architecture of vessel traits affecting hydraulic physiology and resilience to water stress. Vessel traits were measured for clonally replicated genotypes of a unique Populus deltoides x nigra population carrying genomically defined insertions and deletions that create gene dosage variation. We found significant phenotypic variation for all traits measured (mean vessel diameter, height-corrected mean vessel diameter, vessel frequency, height-corrected vessel frequency, vessel grouping index, and mean vessel circularity), and that all traits were under genetic control and showed moderate heritability values, ranging from 0.32 to 0.53. Whole-genome scans of correlations between gene dosage and phenotypic traits identified quantitative trait loci for tree height, mean vessel diameter, height-corrected mean vessel diameter, height-corrected vessel frequency, and vessel grouping index. Our results demonstrate that vessel traits affecting hydraulic physiology are under genetic control, and both pleiotropic and trait-specific quantitative trait loci are found for these traits.


2000 ◽  
Vol 1 (4) ◽  
pp. 251-259 ◽  
Author(s):  
KE Clemens ◽  
G Churchill ◽  
N Bhatt ◽  
K Richardson ◽  
FP Noonan

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