Genetic diversity and population structure of apple germplasm from Eastern Black Sea region of Turkey by SSRs

2022 ◽  
Vol 294 ◽  
pp. 110793
Author(s):  
Melike Bakɪr ◽  
Hatice Dumanoglu ◽  
Ahmet Aygun ◽  
Veli Erdogan ◽  
Said Efe Dost ◽  
...  
2014 ◽  
Vol 13 (2) ◽  
pp. 119-130 ◽  
Author(s):  
Svetlana Landjeva ◽  
Ganka Ganeva ◽  
Viktor Korzun ◽  
Dean Palejev ◽  
Sabina Chebotar ◽  
...  

Old germplasm is an important genetic resource for enhancing modern crops with new alleles. In the present study, the genetic diversity of 52 historic varieties and landraces of bread wheat originated from the Western (Bulgaria) and Northeastern (Ukraine, Russia and Georgia) regions of the Black Sea basin was assessed based on microsatellite markers and agronomic characteristics. A set of 24 markers detected a total of 263 alleles at 25 microsatellite loci, with an average number of 10.5 alleles per locus and an average polymorphic information content (PIC) of 0.74. A total of 63 alleles at 22 loci were unique, being specific to a particular accession. Half of the alleles (132) were regionally specific, and the rest were common between the Western and Northeastern accessions. The latter group was characterized with greater total and private allelic richness, a higher number of unique alleles and a higher average PIC. The population was found to be very heterogeneous (average heterogeneity 41%), with the Northeastern pool (52.8%) being more diverse than the Western pool (30.9%). Most of the accessions of the Western group clustered together, and the rest were distributed among the subclusters of the Northeastern germplasm. Large inter-group differences in the frequencies of alleles ranging from 3.1 at Xgwm294-2A to 16.7 at Xgwm333-7B were observed. This variation might partly account for the differences in certain yield-related traits. The Northeastern accessions had significantly longer spikes with more number of spikelets. Some issues related to germplasm preservation in seed genebanks are discussed herein. The large molecular variation observed could be utilized by breeders for the selection of diverse parents, or by researchers for the production of mapping populations.


1970 ◽  
Vol 21 ◽  
pp. 252-254
Author(s):  
Ya. M. Mishchuk ◽  
S. V. Serga ◽  
D. B. Radionov ◽  
V. V. Zamorov ◽  
V. Yu. Chuiko ◽  
...  

Aim. To identify the Ame17 polymorphic variants for round goby Neogobius melanostomus from Northwest Black Sea region. Methods. We determined polymorphism for 102 individuals of round goby. Genotyping was performed by PCR-analysis of Ame17 as described by Brown et al., 2008. The PCR-amplified DNA products were subjected to electrophoresis in 8 % polyacrylamide gel. Results. There have been identified 23 alleles. The range of repeat sizes was from 140 to 300 bp. The average heterozygosity was 0.76. Conclusions. There have been analyzed polymorphisms of Ame17 microsatellite locus for round goby from Northwest Black Sea region. The highest genetic diversity at Ame17 locus was observed for fish from the Gulf of Odessa. In terms of heterozygosity subpopulation of round goby from Bay Dzharylgach was significantly different from other localities. Keywords: round goby, polymorphism, microsatellite loci, Ame17.


2015 ◽  
Vol 57 (4) ◽  
pp. 171-177 ◽  
Author(s):  
Melih Okcu ◽  
Özgün Kalkışım ◽  
Zühal Okcu ◽  
Besim Karabulut ◽  
Nalan Yildirim ◽  
...  

2014 ◽  
Vol 57 (1) ◽  
pp. 1-12 ◽  
Author(s):  
Emel Özkan Ünal ◽  
M. İhsan Soysal ◽  
Eren Yüncü ◽  
Nihan Dilşad Dağtaş ◽  
İnci Togan

Abstract. In this study, twenty microsatellite loci were used to define genetic diversity among 56 water buffalo samples. Their somatic tissues (the skin and cartilage tissues from ears) and DNAs were deposited in Turkish Gene Banks. Samples of healthy animals were collected from three different geographic regions: Northern Turkey, North-Western Turkey and Eastern Thrace. Three (loci CSSM57, ETH3) to ten (locus CSSM47) different alleles were identified per micro-satellite locus in a total of 103 alleles. PIC values for the micro-satellite loci analysed ranged from 0.14 (CSSM32) to 0.82 (CSSM47) with a mean of 0.4945. In all of the populations for each of the loci, the observed heterozygosities (HO) were greater than the expected heterozygosities (HE), indicating that populations suffered from bottleneck. HE per population ranged between 0.5359 in the Black Sea Region and 0.5208 in the Aegean-South Marmara Region. Within the population, inbreeding estimates (FIS) was positive in only four of the 20 loci analysed. Individuals of the different geographic populations did not cluster on the neighbour joining tree which was constructed on the basis of allele sharing distances. Population differentiation was further visualized by Factorial Correspondence Analysis and determined by the pairwise estimations of fixation index (FST) and Nei’s standard genetic distance (Da). The results revealed that populations have inertia (as depicted by Factorial Correspondence Analysis), they are differentiated significantly but little (by pairwise FST values) and the least genetic distance is between Black Sea Region and Thrace Region. Comparative studies indicated that the genetic diversity of water buffalo harboured in the Gene Banks of Turkey is at the lower end of the diversity spectrum. This study thus highlights the usefulness of heterologous bovine microsatellite markers to assess the genetic variability in Anatolian water buffalo breeds. Furthermore, the results can be utilized for future breeding strategies and conservation.


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