Scale dependence in functional equivalence and difference in the soil microbiome

2021 ◽  
pp. 108451
Author(s):  
Alexander Polussa ◽  
Javier Gonzalez-Rivero ◽  
Nicholas Fields ◽  
Fiona V. Jevon ◽  
Stephen A. Wood ◽  
...  
2018 ◽  
Vol 613 ◽  
pp. A15 ◽  
Author(s):  
Patrick Simon ◽  
Stefan Hilbert

Galaxies are biased tracers of the matter density on cosmological scales. For future tests of galaxy models, we refine and assess a method to measure galaxy biasing as a function of physical scalekwith weak gravitational lensing. This method enables us to reconstruct the galaxy bias factorb(k) as well as the galaxy-matter correlationr(k) on spatial scales between 0.01hMpc−1≲k≲ 10hMpc−1for redshift-binned lens galaxies below redshiftz≲ 0.6. In the refinement, we account for an intrinsic alignment of source ellipticities, and we correct for the magnification bias of the lens galaxies, relevant for the galaxy-galaxy lensing signal, to improve the accuracy of the reconstructedr(k). For simulated data, the reconstructions achieve an accuracy of 3–7% (68% confidence level) over the abovek-range for a survey area and a typical depth of contemporary ground-based surveys. Realistically the accuracy is, however, probably reduced to about 10–15%, mainly by systematic uncertainties in the assumed intrinsic source alignment, the fiducial cosmology, and the redshift distributions of lens and source galaxies (in that order). Furthermore, our reconstruction technique employs physical templates forb(k) andr(k) that elucidate the impact of central galaxies and the halo-occupation statistics of satellite galaxies on the scale-dependence of galaxy bias, which we discuss in the paper. In a first demonstration, we apply this method to previous measurements in the Garching-Bonn Deep Survey and give a physical interpretation of the lens population.


Author(s):  
Jinghui Zhang ◽  
François Gillet ◽  
Sándor Bartha ◽  
Juha Mikael Alatalo ◽  
Idoia Biurrun ◽  
...  

Author(s):  
Alicia Balbín-Suárez ◽  
Samuel Jacquiod ◽  
Annmarie-Deetja Rohr ◽  
Benye Liu ◽  
Henryk Flachowsky ◽  
...  

Abstract A soil column split-root experiment was designed to investigate the ability of apple replant disease (ARD) causing agents to spread in soil. ‘M26’ apple rootstocks grew into a top layer of Control soil, followed by a barrier-free split-soil layer (Control soil/ARD soil). We observed a severely reduced root growth, concomitant with enhanced gene expression of phytoalexin biosynthetic genes and phytoalexin content in roots from ARD soil, indicating a pronounced local plant defense response. Amplicon sequencing (bacteria, archaea, fungi) revealed local shifts in diversity and composition of microorganisms in the rhizoplane of roots from ARD soil. An enrichment of OTUs affiliated to potential ARD fungal pathogens (Ilyonectria and Nectria sp.) and bacteria frequently associated with ARD (Streptomyces, Variovorax) was noted. In conclusion, our integrated study supports the idea of ARD being local and not spreading into surrounding soil, as only the roots in ARD soil were affected in terms of growth, phytoalexin biosynthetic gene expression, phytoalexin production, and altered microbiome structure. This study further reinforces the microbiological nature of ARD, being likely triggered by a disturbed soil microbiome enriched with low mobility ARD-causing agents that induce a strong plant defense and rhizoplane microbiome dysbiosis, concurring with root damage.


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