scholarly journals Gene selection using hybrid binary black hole algorithm and modified binary particle swarm optimization

Genomics ◽  
2019 ◽  
Vol 111 (4) ◽  
pp. 669-686 ◽  
Author(s):  
Elnaz Pashaei ◽  
Elham Pashaei ◽  
Nizamettin Aydin
Author(s):  
Prativa Agarwalla ◽  
Sumitra Mukhopadhyay

Pathway information for cancer detection helps to find co-regulated gene groups whose collective expression is strongly associated with cancer development. In this paper, a collaborative multi-swarm binary particle swarm optimization (MS-BPSO) based gene selection technique is proposed that outperforms to identify the pathway marker genes. We have compared our proposed method with various statistical and pathway based gene selection techniques for different popular cancer datasets as well as a detailed comparative study is illustrated using different meta-heuristic algorithms like binary coded particle swarm optimization (BPSO), binary coded differential evolution (BDE), binary coded artificial bee colony (BABC) and genetic algorithm (GA). Experimental results show that the proposed MS-BPSO based method performs significantly better and the improved multi swarm concept generates a good subset of pathway markers which provides more effective insight to the gene-disease association with high accuracy and reliability.


2013 ◽  
Vol 8 (1) ◽  
Author(s):  
Mohd Saberi Mohamad ◽  
Sigeru Omatu ◽  
Safaai Deris ◽  
Michifumi Yoshioka ◽  
Afnizanfaizal Abdullah ◽  
...  

Author(s):  
Mohamad Nizam Aliman ◽  
Zuwairie Ibrahim ◽  
Fardila Naim ◽  
Sophan Wahyudi Nawawi ◽  
Shahdan Sudin

Particle Swarm Optimization (PSO) and Gravitational Search Algorithm are a well known population-based heuristic optimization techniques. PSO is inspired from a motion flock of birds searching for a food. In PSO, a bird adjusts its position according to its own ‘‘experience’’ as well as the experience of other birds. Tracking and memorizing the best position encountered build bird’s experience which will leads to optimal solution. GSA is based on the Newtonian gravity and motion laws between several masses. In GSA, the heaviest mass presents an optimum solution in the search space. Other agents inside the population are attracted to heaviest mass and will finally converge to produce best solution. Black Hole Algorithm (BH) is one of the optimization technique recently proposed for data clustering problem. BH algorithm is inspired by the natural universe phenomenon called "black hole”. In BH algorithm, the best solution is selected to be the black hole and the rest of candidates which are called stars will be drawn towards the black hole. In this paper, performance of BH algorithm will be analyzed and reviewed for continuous search space using CEC2014 benchmark dataset against Gravitational Search Algorithm (GSA) and Particle Swarm Optimization (PSO). CEC2014 benchmark dataset contains 4 unimodal, 7 multimodal and 6 hybrid functions. Several common parameters has been chosen to make an equal comparison between these algorithm such as size of population is 30, 1000 iteration, 30 dimension and 30 times of experiment. 


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