Molecular Dynamics Simulations of the Bacterial Outer Membrane Protein FhuA: A Comparative Study of the Ferrichrome-Free and Bound States

Outer Membrane ◽

Outer Membrane Protein ◽

Bound States ◽

Faculty Opinions recommendation of Molecular dynamics simulations of the bacterial outer membrane protein FhuA: a comparative study of the ferrichrome-free and bound states.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1015570.197506 ◽

2003 ◽

Author(s):

Tjerk P. Straatsma

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽

Comparative Study ◽

Outer Membrane ◽

Outer Membrane Protein ◽

Bound States ◽

Multiple conformational states and gate opening of outer membrane protein TolC revealed by molecular dynamics simulations

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24573 ◽

2014 ◽

Vol 82 (9) ◽

pp. 2169-2179 ◽

Cited By ~ 4

Author(s):

Beibei Wang ◽

Jingwei Weng ◽

Wenning Wang

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽

Outer Membrane ◽

Outer Membrane Protein ◽

Conformational States ◽

Gate Opening ◽

Molecular dynamics simulations of bacterial outer membrane lipid extraction: Adequate sampling?

The Journal of Chemical Physics ◽

10.1063/5.0017734 ◽

2020 ◽

Vol 153 (4) ◽

pp. 044122

Author(s):

Jonathan Shearer ◽

Jan K. Marzinek ◽

Peter J. Bond ◽

Syma Khalid

Keyword(s):

Molecular Dynamics ◽

Outer Membrane ◽

Lipid Extraction ◽

Membrane Lipid ◽

Adequate Sampling ◽

One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP

Molecular Membrane Biology ◽

10.1080/09687680902788967 ◽

2009 ◽

Vol 26 (4) ◽

pp. 205-214 ◽

Cited By ~ 17

Author(s):

Katherine Cox ◽

Mark S.P. Sansom

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Membrane Protein ◽

Outer Membrane ◽

Simulation Study ◽

Outer Membrane Protein ◽

Dynamics Simulation ◽

Bacterial Outer Membrane

Comparative Study on Bacterial Outer Membrane Protein (BOMP) and Bacterial Outer Membrane Gene (BOMPG) Vaccination to Goldfish Carassius Auratus against Aeromonas Hydrophila

Journal of Vaccines & Vaccination ◽

10.4172/2157-7560.1000281 ◽

2015 ◽

Vol 06 (03) ◽

Author(s):

Sekar Divya Vijayaragavan

Keyword(s):

Membrane Protein ◽

Comparative Study ◽

Outer Membrane ◽

Outer Membrane Protein ◽

Aeromonas Hydrophila ◽

Carassius Auratus ◽

Goldfish Carassius Auratus ◽

Membrane Gene

Faculty Opinions recommendation of Modeling and simulations of a bacterial outer membrane protein: OprF from Pseudomonas aeruginosa.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1030573.359459 ◽

2006 ◽

Author(s):

Tjerk P. Straatsma

Keyword(s):

Pseudomonas Aeruginosa ◽

Membrane Protein ◽

Outer Membrane ◽

Outer Membrane Protein ◽

Modeling And Simulations ◽

Bacterial Outer Membrane

Nanoindentation of single-crystal and polycrystalline yttria-stabilized zirconia: A comparative study by experiments and molecular dynamics simulations

Journal of Alloys and Compounds ◽

10.1016/j.jallcom.2021.160336 ◽

2021 ◽

pp. 160336

Author(s):

Jianli Zhou ◽

Zhenjun Jiao ◽

Jin Zhang ◽

Zheng Zhong

Keyword(s):

Molecular Dynamics ◽

Comparative Study ◽

Single Crystal ◽

Yttria Stabilized Zirconia ◽

Stabilized Zirconia ◽

Conformational dynamics and membrane interactions of the E. coli outer membrane protein FecA: A molecular dynamics simulation study

Biochimica et Biophysica Acta (BBA) - Biomembranes ◽

10.1016/j.bbamem.2012.08.021 ◽

2013 ◽

Vol 1828 (2) ◽

pp. 284-293 ◽

Cited By ~ 41

Author(s):

Thomas J. Piggot ◽

Daniel A. Holdbrook ◽

Syma Khalid

Keyword(s):

Molecular Dynamics ◽

Molecular Dynamics Simulation ◽

Membrane Protein ◽

Outer Membrane ◽

Simulation Study ◽

Outer Membrane Protein ◽

Conformational Dynamics ◽

Dynamics Simulation ◽

Membrane Interactions ◽

E Coli

Comparative Study of Force Fields for Molecular Dynamics Simulations of α-Glycine Crystal Growth from Solution

Crystal Growth & Design ◽

10.1021/cg100906s ◽

2010 ◽

Vol 10 (12) ◽

pp. 5146-5158 ◽

Cited By ~ 34

Author(s):

Daniel W. Cheong ◽

Yi Di Boon

Keyword(s):

Molecular Dynamics ◽

Crystal Growth ◽

Comparative Study ◽

Force Fields ◽

Growth From Solution ◽

Molecular dynamics simulations of outer-membrane protease T fromE. colibased on a hybrid coarse-grained/atomistic potential

Journal of Physics Condensed Matter ◽

10.1088/0953-8984/18/14/s16 ◽

2006 ◽

Vol 18 (14) ◽

pp. S347-S355 ◽

Cited By ~ 10

Author(s):

Marilisa Neri ◽

Claudio Anselmi ◽

Vincenzo Carnevale ◽

Attilio V Vargiu ◽

Paolo Carloni

Keyword(s):

Molecular Dynamics ◽

Outer Membrane ◽

Coarse Grained ◽