Single molecule analysis of DNA replication

Biochimie ◽  
1999 ◽  
Vol 81 (8-9) ◽  
pp. 859-871 ◽  
Author(s):  
John Herrick ◽  
Aaron Bensimon
2015 ◽  
Vol 210 (2) ◽  
pp. 177-179 ◽  
Author(s):  
Susan A. Gerbi

Using single molecule analysis of replicated DNA (SMARD), Drosopoulos et al. (2015; J. Cell Biol. http://dx.doi.org/10.1083/jcb.201410061) report that DNA replication initiates at measurable frequency within the telomere of mouse chromosome arm 14q. They demonstrate that resolution of G4 structures on the G-rich template strand of the telomere requires some overlapping functions of BLM and WRN helicase for leading strand synthesis.


Methods ◽  
2012 ◽  
Vol 57 (2) ◽  
pp. 179-186 ◽  
Author(s):  
Hasan Yardimci ◽  
Anna B. Loveland ◽  
Antoine M. van Oijen ◽  
Johannes C. Walter

2015 ◽  
Vol 43 (5) ◽  
pp. 2655-2665 ◽  
Author(s):  
Simone Guedes Calderano ◽  
William C. Drosopoulos ◽  
Marina Mônaco Quaresma ◽  
Catarina A. Marques ◽  
Settapong Kosiyatrakul ◽  
...  

BIO-PROTOCOL ◽  
2017 ◽  
Vol 7 (11) ◽  
Author(s):  
Hélène Tourrière ◽  
Julie Saksouk ◽  
Armelle Lengronne ◽  
Philippe Pasero

2013 ◽  
Vol 24 (5) ◽  
pp. 578-587 ◽  
Author(s):  
Hui Hua ◽  
Mandana Namdar ◽  
Olivier Ganier ◽  
Juraj Gregan ◽  
Marcel Méchali ◽  
...  

Meiosis involves two successive rounds of chromosome segregation without an intervening S phase. Exit from meiosis I is distinct from mitotic exit, in that replication origins are not licensed by Mcm2-7 chromatin binding, but spindle disassembly occurs during a transient interphase-like state before meiosis II. The absence of licensing is assumed to explain the block to DNA replication, but this has not been formally tested. Here we attempt to subvert this block by expressing the licensing control factors Cdc18 and Cdt1 during the interval between meiotic nuclear divisions. Surprisingly, this leads only to a partial round of DNA replication, even when these factors are overexpressed and effect clear Mcm2-7 chromatin binding. Combining Cdc18 and Cdt1 expression with modulation of cyclin-dependent kinase activity, activation of Dbf4-dependent kinase, or deletion of the Spd1 inhibitor of ribonucleotide reductase has little additional effect on the extent of DNA replication. Single-molecule analysis indicates this partial round of replication results from inefficient progression of replication forks, and thus both initiation and elongation replication steps may be inhibited in late meiosis. In addition, DNA replication or damage during the meiosis I–II interval fails to arrest meiotic progress, suggesting absence of checkpoint regulation of meiosis II entry.


2018 ◽  
Author(s):  
Magali Hennion ◽  
Jean-Michel Arbona ◽  
Corinne Cruaud ◽  
Florence Proux ◽  
Benoît Le Tallec ◽  
...  

ABSTRACTWe have harnessed nanopore sequencing to study DNA replication genome-wide at the single-molecule level. Using in vitro prepared DNA substrates, we characterized the effect of bromodeoxyuridine (BrdU) substitution for thymidine on the MinION nanopore electrical signal. Using a neural-network basecaller trained on yeast DNA containing either BrdU or thymidine, we identified BrdU-labelled tracts in yeast cells synchronously entering S phase in the presence of hydroxyurea and BrdU. As expected, the BrdU-labelled tracts coincided with previously identified early-firing, but not late-firing, replication origins. These results open the way to high-throughput, high-resolution, single-molecule analysis of DNA replication in many experimental systems.


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