Molecular analysis of the split cox1 gene from the Basidiomycota Agrocybe aegerita: relationship of its introns with homologous Ascomycota introns and divergence levels from common ancestral copies

Gene ◽  
1998 ◽  
Vol 220 (1-2) ◽  
pp. 45-53 ◽  
Author(s):  
Patrice Gonzalez ◽  
Gérard Barroso ◽  
Jacques Labarère
2017 ◽  
pp. 155-176
Author(s):  
Miguel Lozano-Terol ◽  
María Juliana Rodríguez-García ◽  
José Galián

En este estudio se analizan dos fragmentos del gen de la citocromo c oxidasa subunidad I (COX1) del ADN mitocondrial de 61 individuos del género Rhynchophorus colectados en la Región de Murcia a fin de determinar su procedencia. El análisis filogenético del fragmento 1 de las muestras de la Región de Murcia conjuntamente con las secuencias disponibles en GenBank indica que los individuos corresponden a la especie Rhynchophorus ferrugineus.Las secuencias de Murcia se colapsan en un único haplotipo (H8 mediterráneo) que aparece dentro del clado de R. ferrugineus. De los análisis filogeográficos se infiere que el origen de los individuos de Murcia es Egipto. Adicionalmente, se examinó una región contigua del COX1 (fragmento 2) en la que las secuencias se colapsaron en dos haplotipos. In this research two fragments of the cytochrome c oxidase subunit I (COX1) gene of the mitochondrial DNA were analyzed in 61 individuals of the genus Rhynchophorus collected in the Region of Murcia with the aim of determining their origin. Phylogenetic analysis of fragment 1 of the samples collected in the Region of Murcia together with the available sequences in GenBank, indicated that these individuals correspond to the species R. ferrugineus. Sequences from Murcia collapsed into the H8 Mediterranean haplotype, which cluster into the R. ferrugineus clade. Phylogeographic analysis shows that the origin of the individuals collected in the Region of Murcia is Egypt. Additionally, a contiguous fragment of COX1 (fragment 2) was analyzed and the sequences collapsed into two haplotypes.


Nature ◽  
1980 ◽  
Vol 288 (5789) ◽  
pp. 368-370 ◽  
Author(s):  
Althea K. Alton ◽  
Lee M. Silver ◽  
Karen Artzt ◽  
Dorothea Bennett

2019 ◽  
Vol 88 (1) ◽  
pp. 1-13
Author(s):  
Marco Boriani ◽  
Andrea Taddei ◽  
Marco Bazzoli ◽  
Serena Michelotti

Abstract Three exotic bostrichid beetle species – Sinoxylon anale, S. indicum and S. sudanicum – were simultaneously detected in Italy from wood packaging material declared compliant with the International Standard for Phytosanitary Measures No. 15 (ISPM 15) and originating from India. These taxa were identified through morphological characters and sequences of COX1 gene were obtained. This case study was analysed and the findings support the need to implement adequate wood requirements according to IPPC/FAO standards.


Zootaxa ◽  
2021 ◽  
Vol 4970 (2) ◽  
pp. 340-352
Author(s):  
CHENG-QING LIAO ◽  
LIU-SHENG CHEN ◽  
GUO-HUA HUANG

A new species, Neopseustis rectagnatha Liao, Chen & Huang sp. nov., is described from the Nanling Mountains, China. The photos of the adults, male and female genitalia, and abdominal special structures are presented. The new species is similar to N. meyricki Hering, 1925 and N. sinensis Davis, 1975, but it can be distinguished easily by characters in the male genitalia as the straight gnathos and the lateroposterior process of anellus h-type bifurcated. Key to males of all species of Neopseustis Meyrick, 1909 and some biological information are also given. Molecular analysis based on COI sequences is used to infer the relationship of the new species within Neopseustis. 


Biologia ◽  
2013 ◽  
Vol 68 (6) ◽  
Author(s):  
Ebrahim Shokoohi ◽  
Abdolrahman Mehrabi-Nasab ◽  
Joaquin Abolafia ◽  
Oleksandr Holovachov

AbstractThree species of Plectus Bastian, 1865 viz., P. aquatilis and P. pusillus from Kerman province and P. velox from Alborz province, Iran are described and illustrated. Partial sequences of 18S region of ribosomal DNA gene were amplified for P. aquatilis and P. pusillus. The Blast results of population of P. aquatilis from Iran showed 8–10 nucleotides differences with populations of the same species (AF036602; GQ892827; AY284700) reported from the UK, Belgium and The Netherlands, respectively. Whereas Iranian population of P. pusillus showed 14–16 nucleotides differences with P. cf. pusillus (AY284705; AY284704) reported from The Netherlands. Molecular analysis revealed close relationship of the Iranian plectids with P. cf. parvus (AY284699) reported from The Netherlands. Phylogenetic relationships with other related species in the genus Plectus and closely related genera that are available in the GenBank are given.


Zootaxa ◽  
2018 ◽  
Vol 4497 (1) ◽  
pp. 99 ◽  
Author(s):  
LI-PING CHEN ◽  
YA-GE CHANG ◽  
JIAN LI ◽  
JIAN-MEI WANG ◽  
JIN-LIN LIU ◽  
...  

Grasshoppers (Orthoptera: Acridoidea) are the main pests in agriculture, animal husbandry and forestry, and some species of grasshoppers can cause serious disaster. Taxonomy is the basis of pest control. Traditional morphological identification is time-consuming and laborious. It may be due to the existence of cryptic species or the limited number of morphologists, making the identification extremely unstable. In recent years, with the development of molecular systematics, DNA barcoding technology has been applied to environment, ecology, quarantine and so on. This study focuses on testing the feasibility of DNA barcoding in the species identification for superfamily Acridoidea. Sequences of the cox1 gene were obtained from 245 individuals of 43 species of Acridoidea and one species of Tetrigoidea as outgroup from Hebei Province. Phylogenetic, genetic distance and sequence difference threshold analyses using the Maximum Likelihood (ML), Automatic Barcode Gap Discovery (ABGD) and Molecular Defined Operational Taxonomic Units (MOTU) methods, respectively, were performed for obtained sequences and the 139 additional sequences of 21 species downloaded from GenBank. The results have shown that 40, 33, and 35 species among the 48 species are consistent with the traditional morphological classification based on the phylogenetic tree, ABGD and MOTU results, respectively and the DNA barcoding technology is very efficient and helpful for identifying the species of the superfamily Acridoidea; however, the morphological approach is still playing a key role in the species identifications. It also indicates that the cox1 gene is suitable for the phylogeny of genera and species level, but it is not suitable for the phylogenetic relationship of the advanced taxa such as families. 


Paleobiology ◽  
1980 ◽  
Vol 6 (02) ◽  
pp. 146-160 ◽  
Author(s):  
William A. Oliver

The Mesozoic-Cenozoic coral Order Scleractinia has been suggested to have originated or evolved (1) by direct descent from the Paleozoic Order Rugosa or (2) by the development of a skeleton in members of one of the anemone groups that probably have existed throughout Phanerozoic time. In spite of much work on the subject, advocates of the direct descent hypothesis have failed to find convincing evidence of this relationship. Critical points are:(1) Rugosan septal insertion is serial; Scleractinian insertion is cyclic; no intermediate stages have been demonstrated. Apparent intermediates are Scleractinia having bilateral cyclic insertion or teratological Rugosa.(2) There is convincing evidence that the skeletons of many Rugosa were calcitic and none are known to be or to have been aragonitic. In contrast, the skeletons of all living Scleractinia are aragonitic and there is evidence that fossil Scleractinia were aragonitic also. The mineralogic difference is almost certainly due to intrinsic biologic factors.(3) No early Triassic corals of either group are known. This fact is not compelling (by itself) but is important in connection with points 1 and 2, because, given direct descent, both changes took place during this only stage in the history of the two groups in which there are no known corals.


Author(s):  
D. F. Blake ◽  
L. F. Allard ◽  
D. R. Peacor

Echinodermata is a phylum of marine invertebrates which has been extant since Cambrian time (c.a. 500 m.y. before the present). Modern examples of echinoderms include sea urchins, sea stars, and sea lilies (crinoids). The endoskeletons of echinoderms are composed of plates or ossicles (Fig. 1) which are with few exceptions, porous, single crystals of high-magnesian calcite. Despite their single crystal nature, fracture surfaces do not exhibit the near-perfect {10.4} cleavage characteristic of inorganic calcite. This paradoxical mix of biogenic and inorganic features has prompted much recent work on echinoderm skeletal crystallography. Furthermore, fossil echinoderm hard parts comprise a volumetrically significant portion of some marine limestones sequences. The ultrastructural and microchemical characterization of modern skeletal material should lend insight into: 1). The nature of the biogenic processes involved, for example, the relationship of Mg heterogeneity to morphological and structural features in modern echinoderm material, and 2). The nature of the diagenetic changes undergone by their ancient, fossilized counterparts. In this study, high resolution TEM (HRTEM), high voltage TEM (HVTEM), and STEM microanalysis are used to characterize tha ultrastructural and microchemical composition of skeletal elements of the modern crinoid Neocrinus blakei.


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