scholarly journals A contribution to the taxonomy of the genus Rinodina (Physciaceae, lichenized Ascomycotina) using combined ITS and mtSSU rDNA data

2010 ◽  
Vol 42 (5) ◽  
pp. 521-531 ◽  
Author(s):  
Olga NADYEINA ◽  
Martin GRUBE ◽  
Helmut MAYRHOFER
Keyword(s):  
Phylogenetic Analysis ◽  
New Records ◽  
The Other ◽  
Phylogenetic Position ◽  
Considerable Variability ◽  
Taxonomic Changes ◽  
Molecular Characters

AbstractTo test the phylogenetic position of phenotypically peculiar species in the Physciaceae we generated 47 new sequences (26 of nrITS region and 21 of mtSSU rDNA) from 19 crustose taxa of Physciaceae mainly from the genus Rinodina. Phylogenetic analysis confirmed the Buellia and Physcia groups. The analysis revealed a considerable variability of characters traditionally used for classification, especially in the delimitation of the genera Buellia and Rinodina. While ascus types agree well with the distinction of the Buellia and Physcia groups, none of the other traditional characters, including excipulum type and ascospore thickening, were consistent within subclades of the Physcia group. We suggest that both excipulum type and ascospore characters are rather dynamic in the evolution of Rinodina species and only appear consistent in morphologically more complex foliose and fruticose groups, which are characterized by thallus characters not present in the crustose groups. Two recent taxonomic changes are supported by molecular characters: Endohyalina insularis (syn. ‘Rinodina’ insularis) and Rinodina lindingeri (syn. ‘Buellia’ lindingeri). In addition Rinodina parvula (syn. ‘Buellia’ parvula) is reinstated. New records for Endohyalina brandii, E. diederichii, E. insularis and Rinodina albana are presented.

Cryptophaea, a new genus of byssoid Arthoniaceae (lichenized Ascomycota) and its phylogenetic position

Phytotaxa ◽  
2016 ◽  
Vol 261 (2) ◽  
pp. 168 ◽  
Author(s):  
DRIES VAN DEN BROECK ◽  
DAMIEN ERTZ
Keyword(s):  
Phylogenetic Analysis ◽  
New Genus ◽  
The Other ◽  
Congo Basin ◽  
Phylogenetic Position

Cryptophaea, a new corticolous lichen genus, is described from the Congo basin as belonging to the cryptothecioid Arthoniaceae. It is characterized by (1) maculiform, tomentose, brownish ascomata lacking a distinct exciple, (2) the absence of a distinct hamathecium of paraphysoids, (3) a byssoid crustose thallus with a trentepohlioid photobiont, (4) greyish to brown (sub)muriform ascospores and (5) the presence of parietin, an anthraquinone, absent in the other cryptothecioid Arthoniaceae. At this moment the new genus is represented by only one species, Cryptophaea phaeospora sp. nov. A phylogenetic analysis of mtSSU and RPB2 sequences shows Cryptophaea as sister genus to Glomerulophoron in the cryptothecioid Arthoniaceae.

A New and Expanded Phylogenetic Analysis of Hyptidinae (Ocimeae-Lamiaceae)

2021 ◽  
Vol 46 (4) ◽  
pp. 1086-1094
Author(s):  
José Floriano Barêa Pastore ◽  
Guilherme Medeiros Antar ◽  
Arthur de Souza Soares ◽  
Félix Forest ◽  
Raymond Mervyn Harley
Keyword(s):  
Phylogenetic Analysis ◽  
New Combination ◽  
Phylogenetic Position ◽  
Phylogenetic Study ◽  
Generic Delimitation ◽  
Taxonomic Changes ◽  
Plastid Markers ◽  
Pollen Release ◽  
Almost All ◽  
Explosive Mechanism

Abstract— Hyptidinae, ca. 400 species, is an important component of Neotropical vegetation formations. Members of the subtribe possess flowers arranged in variously modified bracteolate cymes and nutlets with an expanded areole and all share a unique explosive mechanism of pollen release, except for Asterohyptis. In a recent phylogenetic study, the group had its generic delimitations rearranged with the recognition of 19 genera in the subtribe. Although the previous phylogenetic analysis covered almost all the higher taxa in the subtribe, it lacked a broader sampling at the species level. Here we present a new expanded phylogenetic analysis for the subtribe comprising 153 accessions of Hyptidinae sequenced for the nuclear nrITS, nrETS, and waxy regions and the plastid markers trnL-F, trnS-G, trnD-T, and matK. Our results widely support the previous phylogenetic results with some changes in the support and relationship between genera. It also uncovers the need for a new combination of Eriope machrisae in Hypenia and the phylogenetic position of Hyptis sect. Rhytidea, which was demonstrated to be part of Mesosphaerum. The generic delimitation in Hyptidinae is discussed, and we recommend that further studies with more markers are needed to confirm the monophyly of Hyptidendron and Mesosphaerum, as well as to support taxonomic changes on the infrageneric delimitation within Hyptis s. s.

scholarly journals Phylogenetic relationships of 'Polyalthia' in Fiji

PhytoKeys ◽  
2020 ◽  
Vol 165 ◽  
pp. 99-113
Author(s):  
Bine Xue ◽  
Yanwen Chen ◽  
Richard M. K. Saunders
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Strong Support ◽  
The Other ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Study ◽  
Herbarium Specimens ◽  
Molecular Phylogenetic ◽  
Taxonomic Changes

The genus Polyalthia (Annonaceae) has undergone dramatic taxonomic changes in recent years. Nine Polyalthia species have historically been recognized in Fiji, all of which have subsequently been transferred to three different genera, viz. Goniothalamus, Huberantha and Meiogyne. The transfer of six of these species has received strong molecular phylogenetic support, although the other three species, Polyalthia amoena, P. capillata and P. loriformis [all transferred to Huberantha], have never previously been sampled in a phylogenetic study. We address this shortfall by sampling available herbarium specimens of all three species and integrating the data in a molecular phylogenetic analysis. The resultant phylogeny provides strong support for the transfer of these species to Huberantha. The taxonomic realignment of all nine Fijian species formerly classified in Polyalthia is also clearly demonstrated and supported by the resultant phylogeny. The updated taxonomic treatments of the nine species, a key to the three genera and a key to the Fijian Huberantha species are provided.

The differential acoustic diagnosis between two Pseudopaludicola sister species (Anura, Leptodactylidae, Leiuperinae)

Zootaxa ◽  
2017 ◽  
Vol 4319 (2) ◽  
pp. 391 ◽  
Author(s):  
FELIPE SILVA DE ANDRADE ◽  
ISABELLE AQUEMI HAGA ◽  
DAVI LEE BANG ◽  
ARIOVALDO ANTONIO GIARETTA
Keyword(s):  
South America ◽  
The Other ◽  
Sister Species ◽  
Taxonomic Changes ◽  
Molecular Characters ◽  
Acoustic Diagnosis

The dwarf swamp frogs, genus Pseudopaludicola, include 21 species, which occur throughout South America (Frost 2016). Pseudopaludicola is recognized as monophyletic, supported by a set of osteological, morphological, and molecular characters (Veiga-Menoncello et al. 2014, and cites therein). Veiga-Menoncello et al. (2014) recognized a clade (“clade II” there), which included two species that share karyotypes with 2n = 20: P. ameghini (Cope, 1887) and P. ternetzi Miranda-Ribeiro, 1937. However, historically these two sister species have undergone many taxonomic changes and so far they do not have a clear taxonomic diagnosis one from the other (Haddad & Cardoso 1987; Lobo 1996; Fávero et al. 2011; Pansonato et al. 2013; Cardozo & Toledo 2013, and cites therein). 

scholarly journals Phylogenetic relationships of the South American Doradoidea (Ostariophysi: Siluriformes)

2014 ◽  
Vol 12 (3) ◽  
pp. 451-564 ◽  
Author(s):  
José L. O. Birindelli
Keyword(s):  
Phylogenetic Analysis ◽  
New Genus ◽  
Morphological Characteristics ◽  
Morphological Characters ◽  
The Other ◽  
Phylogenetic Position ◽  
South American ◽  
Parsimony Analysis ◽  
The South ◽  
Large Size

A phylogenetic analysis based on 311 morphological characters is presented for most species of the Doradidae, all genera of the Auchenipteridae, and representatives of 16 other catfish families. The hypothesis that was derived from the six most parsimonious trees support the monophyly of the South American Doradoidea (Doradidae plus Auchenipteridae), as well as the monophyly of the clade Doradoidea plus the African Mochokidae. In addition, the clade with Sisoroidea plus Aspredinidae was considered sister to Doradoidea plus Mochokidae. Within the Auchenipteridae, the results support the monophyly of the Centromochlinae and Auchenipterinae. The latter is composed of Tocantinsia, and four monophyletic units, two small with Asterophysusand Liosomadoras, and Pseudotatiaand Pseudauchenipterus, respectively, and two large ones with the remaining genera. Within the Doradidae, parsimony analysis recovered Wertheimeriaas sister to Kalyptodoras, composing a clade sister to all remaining doradids, which include Franciscodorasand two monophyletic groups: Astrodoradinae (plus Acanthodorasand Agamyxis) and Doradinae (new arrangement). Wertheimerinae, new subfamily, is described for Kalyptodoras and Wertheimeria. Doradinae is corroborated as monophyletic and composed of four groups, one including Centrochirand Platydoras, the other with the large-size species of doradids (except Oxydoras), another with Orinocodoras, Rhinodoras, and Rhynchodoras, and another with Oxydorasplus all the fimbriate-barbel doradids. Based on the results, the species of Opsodoras are included in Hemidoras; and Tenellus, new genus, is described to include Nemadoras trimaculatus, N. leporhinusand Nemadoras ternetzi. Due to conflicting hypotheses of the phylogenetic position of Acanthodoras, Agamyxis, and Franciscodoras, these are considered as incertae sedisin Doradidae. All suprageneric taxa of the Doradoidea are diagnosed based on synapomorphic morphological characteristics.

On the phylogeny of members of Ceratocystis s.s. and Ophiostoma that possess different anamorphic states, with emphasis on the anamorph genus Leptographium, based on partial ribosomal DNA sequences

2000 ◽  
Vol 78 (7) ◽  
pp. 903-916 ◽  
Author(s):  
Georg Hausner ◽  
James Reid ◽  
Glen R Klassen
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Molecular Data ◽  
Phylogenetic Position ◽  
Phylogenetic Distribution ◽  
Rdna Sequences ◽  
Molecular Characters

Phylogenetic analysis of partial ribosomal DNA sequences was undertaken to assess the phylogenetic distribution of ophiostomatoid anamorphs with an emphasis on members of Leptographium and the generic limits of Ceratocystis sensu lato Ell. & Halst. Molecular data identified one group of Ophiostoma species with anamorphs assignable to Pesotum and Leptographium that appears to be monophyletic. This study also showed that, based on molecular characters, Pesotum pini (Hutchison & Reid) Okada and all Leptographium strains tested, including L. terebrantis Barras & Perry, L. lundbergii Lag. & Melin, and L. procerum (Kendr.) Wingf., could be placed among Ophiostoma species. With regard to the anamorphs of Ophiostoma, we determined that the separation of Leptographium from Pesotum, although convenient, is artificial. The partial ribosomal DNA sequences also confirm that Europhium should be considered a synonym of Ophiostoma. The phylogenetic position of species of Ceratocystis sensu lato with Chalara-like, Knoxdaviesia, and Gabarnaudia anamorphs is also discussed.Key words: Ceratocystis, Ophiostoma, Leptographium, partial rDNA sequences, phylogeny.

Cnidochloa: A New Genus of Grasses from Brazil (Poaceae: Panicoideae: Paniceae)

2020 ◽  
Vol 105 (2) ◽  
pp. 183-194
Author(s):  
Fernando O. Zuloaga ◽  
Sandra S. Aliscioni ◽  
M. Amalia Scataglini
Keyword(s):  
New Genus ◽  
Phylogenetic Position ◽  
South American ◽  
The South ◽  
South American Species ◽  
Molecular Characters

Generic boundaries of the South American species Panicum longipedicellatum Swallen are explored and compared with allied genera of the tribe Paniceae. On the basis of morphological, anatomical, and molecular characters a new genus, Cnidochloa Zuloaga, is proposed. The phylogenetic position of the new genus within the Paniceae is evaluated.

scholarly journals Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications

2019 ◽  
Vol 11 (10) ◽  
pp. 2824-2849 ◽  
Author(s):  
Paweł Mackiewicz ◽  
Adam Dawid Urantówka ◽  
Aleksandra Kroczak ◽  
Dorota Mackiewicz
Keyword(s):  
Phylogenetic Analyses ◽  
Mitochondrial Genes ◽  
The Other ◽  
Phylogenetic Position ◽  
Evolutionary Relationships ◽  
Mitochondrial Genomes ◽  
Ancestral State ◽  
Phylogenetic Information ◽  
Long Time ◽  
Tree Topologies

Abstract Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representatives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of paraphyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. Phylogenetic analyses based on CR sequences subjected to the complex evolution can produce tree topologies inconsistent with real evolutionary relationships between species. Passerines with two CRs showed a higher metabolic rate in relation to their body mass.

The genus Xylaria (Xylariaceae) in the south of China—6. A new Xylaria species based on morphological and molecular characters

Phytotaxa ◽  
2013 ◽  
Vol 147 (2) ◽  
pp. 48 ◽  
Author(s):  
HAI-XIA MA ◽  
LARISSA VASILYEVA ◽  
YU LI
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Its Sequences ◽  
Guizhou Province ◽  
Nrdna Its ◽  
Undescribed Species ◽  
The South ◽  
A New Species ◽  
Molecular Characters

Xylaria fusispora, an undescribed species of Xylaria (Xylariales, Xylariaceae), is described and illustrated as a new species based on collections from Guizhou Province, China. Both morphology and phylogenetic analysis of nrDNA ITS sequences support the establishment of this new species. The fungus is characterized by its fusoid-equilateral ascospores and an ascus apical ring not bluing in Melzer’s reagent. The differences between the new species and the related fungi are discussed.

Phylogenetic analysis of the subfamily Hylodinae (Anura, Leptodactylidae) based on morphological characters

2005 ◽  
Vol 26 (2) ◽  
pp. 139-147 ◽  
Author(s):  
Francisca do Val ◽  
Paulo Nuin
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
Morphological Characters ◽  
The Other ◽  
The Family

AbstractThe systematics and phylogenetic relationships of the family Leptodactylidae are controversial as is the intrafamilial phylogeny of the leptodactylids. Here we analyze the relationships of the leptodactylid subfamily Hylodinae. This subfamily has been considered to be monophyletic and composed of three genera, Hylodes, Crossodactylus and Megaelosia. In the present study 49 characters were used, based on different studies on Leptodactylidae phylogeny. Maximum parsimony methods with unweighted and successively weighted characters were used to estimate the phylogeny of the Hylodinae. Upon analysis, the data provided further evidence of the monophyletic status of the three genera, with Megaelosia being the basal genus and the other two genera being sister taxa. The analysis with successive weighting results in a more resolved topology of the species subgroups of the genus Hylodes and separates this genus from Crossodactylus and confirms that the hylodines are monophyletic.

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