scholarly journals Phylogenetic relationships of 'Polyalthia' in Fiji

PhytoKeys ◽  
2020 ◽  
Vol 165 ◽  
pp. 99-113
Author(s):  
Bine Xue ◽  
Yanwen Chen ◽  
Richard M. K. Saunders
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Strong Support ◽  
The Other ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Study ◽  
Herbarium Specimens ◽  
Molecular Phylogenetic ◽  
Taxonomic Changes

The genus Polyalthia (Annonaceae) has undergone dramatic taxonomic changes in recent years. Nine Polyalthia species have historically been recognized in Fiji, all of which have subsequently been transferred to three different genera, viz. Goniothalamus, Huberantha and Meiogyne. The transfer of six of these species has received strong molecular phylogenetic support, although the other three species, Polyalthia amoena, P. capillata and P. loriformis [all transferred to Huberantha], have never previously been sampled in a phylogenetic study. We address this shortfall by sampling available herbarium specimens of all three species and integrating the data in a molecular phylogenetic analysis. The resultant phylogeny provides strong support for the transfer of these species to Huberantha. The taxonomic realignment of all nine Fijian species formerly classified in Polyalthia is also clearly demonstrated and supported by the resultant phylogeny. The updated taxonomic treatments of the nine species, a key to the three genera and a key to the Fijian Huberantha species are provided.

Molecular phylogeny of Pemphiginae (Hemiptera: Aphididae) inferred from nuclear gene EF-1α sequences

2008 ◽  
Vol 98 (5) ◽  
pp. 499-507 ◽  
Author(s):  
H.C. Zhang ◽  
G.X. Qiao
Keyword(s):  
Phylogenetic Analysis ◽  
Molecular Phylogeny ◽  
Host Specificity ◽  
Nuclear Gene ◽  
Molecular Data ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Study ◽  
Primary Host ◽  
Molecular Phylogenetic Study ◽  
Molecular Phylogenetic

AbstractThree traditional tribes of Fordini, Pemphigini and Eriosomatini comprise Pemphiginae, and there are two subtribes in Fordini and Pemphigini, respectively. Most of the species in this subfamily live heteroecious holocyclic lives with distinct primary host specificity. The three tribes of Pemphigini (except Prociphilina), Eriosomatini and Fordini use three families of plants, Salicaceae (Populus), Ulmaceae (Ulums) and Anacardiaceae (Pistacia and Rhus), as primary hosts, respectively, and form galls on them. Therefore, the Pemphigids are well known as gall makers, and their galls can be divided into true galls and pseudo-galls in type. We performed the first molecular phylogenetic study of Pemphiginae based on molecular data (EF-1α sequences). Results show that Pemphiginae is probably not a monophylum, but the monophyly of Fordini is supported robustly. The monophyly of Pemphigini is not supported, and two subtribes in it, Pemphigina and Prociphilina, are suggested to be raised to tribal level, equal with Fordini and Eriosomatini. The molecular phylogenetic analysis does not show definite relationships among the four tribes of Pemphiginae, as in the previous phylogenetic study based on morphology. It seems that the four tribes radiated at nearly the same time and then evolved independently. Based on this, we can speculate that galls originated independently four times in the four tribes, and there is no evidence to support that true galls are preceded by pseudo-galls, as in the case of thrips and willow sawflies.

Phylogeny of Phyllachora species on bamboo and P. cephalostachyi sp. nov. from China

Phytotaxa ◽  
2021 ◽  
Vol 514 (2) ◽  
pp. 158-166
Author(s):  
XIAO-LING LI ◽  
HAI-YING YU ◽  
XI LUO ◽  
HAO WU ◽  
CHUN-YAN ZHAO ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Diversity ◽  
Phylogenetic Tree ◽  
Phylogenetic Relationships ◽  
Morphological Characteristics ◽  
Molecular Phylogenetic Analysis ◽  
Full Description ◽  
High Species Diversity ◽  
Molecular Phylogenetic

Thirty-seven Phyllachora specimens were collected in China and examined for morphological characteristics. A molecular phylogenetic analysis based on a combined sequence dataset of ITS and LSU was also undertaken. Phyllachora cephalostachyi sp. nov. on Cephalostachyum pergracile is described based on its distinct phylogenetic relationships and a comparison of its morphological characteristics with known Phyllachora species on bamboo. Our results indicate a high species diversity of Phyllachora on bamboo in China. A full description and colour photographs of micro-characters are provided for the new species. A phylogenetic tree to show placement of the new species, and a table to compare morphology of the Phyllachora species reported on bamboo are also provided.

A new species of Tetrataenium (Tordyliinae, Apiaceae) from SW Yunnan, China, based on morphological and molecular data

Phytotaxa ◽  
2021 ◽  
Vol 491 (1) ◽  
pp. 85-91
Author(s):  
ZE-HUAN WANG ◽  
YI WANG ◽  
BAO-LIN LIU ◽  
CHAO-HE WANG ◽  
XIAN-GUO FU
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Molecular Data ◽  
Sensu Stricto ◽  
The Other ◽  
Molecular Phylogenetic Analysis ◽  
Molecular Phylogenetic ◽  
Nuclear Its ◽  
Morphological And Molecular Data ◽  
A New Species

Tetrataenium mianguaqi, a traditionally used medicinal herb in Cangyuan County, SW Yunnan, China, is described as a species new to science and illustrated. Molecular phylogenetic analysis based on nuclear ITS well supports its belonging to Tetrataenium sensu stricto. The new species can be easily distinguished by its unique peltate, palmatilobate basal and lower leaves from the other five Chinese Tetrataenium species.

scholarly journals Molecular phylogenetic analysis of Pulmonata (Mollusca: Gastropoda) on the basis of Histone-3 gene

2019 ◽  
Vol 8 (1) ◽  
Author(s):  
Vijaya Sai Ayyagari ◽  
Krupanidhi Sreerama
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Gene Sequence ◽  
Deep Level ◽  
Molecular Phylogenetic Analysis ◽  
Sequence Length ◽  
Sequence Information ◽  
Good Resolution ◽  
Histone 3 ◽  
Molecular Phylogenetic

Abstract Background In the present study, phylogenetic relationships within Heterobranchia in particular to Pulmonata were evaluated by means of Histone-3 (H3) gene sequence information. H3 gene is a slow evolving marker and is useful in resolving the deep level relationships. This is the first study to report the phylogeny of Pulmonata with more number of representatives from the group on the basis of H3 gene. Results The major groups within Heterobranchia viz. Lower Heterobranchia, Opisthobranchia, and Pulmonata were non-monophyletic. A few of the pulmonate groups’ viz. Planorbidae, Lymnaeidae, Siphonariidae, Veronicellidae, and Stylommatophora were recovered as monophyletic. The concepts of Eupulmonata and Geophila were not observed in the present study. Conclusions The present study was undertaken with an objective to study the phylogeny of Pulmonata reconstructed on the basis of H3 gene and its ability to resolve the deeper divergences in Pulmonata. However, the resolution at the deeper nodes is limited. There is a good resolution at the level of genera. In the future, inclusion of more number of taxa with increased sequence length of H3 marker may yield resolved topologies that may shed more insights into the phylogeny of Pulmonata.

scholarly journals The identity of Hypolepis robusta, as a new synonym of Hypolepis alpina (Dennstaedtiaceae), based on morphology and DNA barcoding and the new distribution

PhytoKeys ◽  
2018 ◽  
Vol 96 ◽  
pp. 35-45 ◽  
Author(s):  
Morigengaowa Morigengaowa ◽  
Jun-Jie Luo ◽  
Ralf Knapp ◽  
Hong-Jin Wei ◽  
Bao-Dong Liu ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Dna Barcoding ◽  
Hainan Island ◽  
Type Material ◽  
Molecular Phylogenetic Analysis ◽  
Herbarium Specimens ◽  
Field Observations ◽  
New Synonym ◽  
Molecular Phylogenetic ◽  
New Distribution

Based on field observations and examinations of herbarium specimens (including type material), consulting the original literature and molecular phylogenetic analysis of the rbcL and trnL-F sequences, it is concluded that Hypolepisrobusta is conspecific with Hypolepisalpina and is here formally treated as a synonym of it. Additionally H.alpina is reported with new distribution records in Guangdong, Guangxi and the Hainan Island of China, respectively.

scholarly journals A Molecular Phylogenetic Study of the Genus Phedimus for Tracing the Origin of “Tottori Fujita” Cultivars

Plants ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 254 ◽  
Author(s):  
Sung Kyung Han ◽  
Tae Hoon Kim ◽  
Jung Sung Kim
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Tree ◽  
Genetic Background ◽  
Molecular Data ◽  
Molecular Phylogenetic Analysis ◽  
Cultivated Plants ◽  
Phylogenetic Position ◽  
Phylogenetic Study ◽  
Molecular Phylogenetic ◽  
Backbone Tree

It is very important to confirm and understand the genetic background of cultivated plants used in multiple applications. The genetic background is the history of crossing between maternal and paternal plants to generate a cultivated plant. If the plant in question was generated from a simple origin and not complicated crossing, we can easily confirm the history using a phylogenetic tree based on molecular data. This study was conducted to trace the origin of “Tottori Fujita 1gou” and “Tottori Fujita 2gou”, which are registered as cultivars originating from Phedimus kamtschaticus. To investigate the phylogenetic position of these cultivars, the backbone tree of the genus Phedimus needed to be further constructed because it retains inarticulate phylogenetic relationships among the wild species. We performed molecular phylogenetic analysis for P. kamtschaticus, Phedimus takesimensis, Phedimus aizoon, and Phedimus middendorffianus, which are assumed as the species of origin for “Tottori Fujita 1gou” and “Tottori Fujita 2gou”. The molecular phylogenetic tree based on the internal transcribed spacer (ITS) and psbA-trnH sequences showed the monophyly of the genus Phedimus, with P. takesimensis forming a single clade. However, P. kamtschaticus and P. aizoon were scattered in the tree. It was verified that “Tottori Fujita 1gou” and “Tottori Fujita 2gou” were embedded in a clade with P. takesimensis and not P. kamtschaticus. Therefore, origination from P. takesimensis was strongly supported. Based on these results, molecular phylogenetic analysis is suggested as a powerful tool for clearly tracing the origin of cultivated plants.

scholarly journals Oreocharis jasminina (Gesneriaceae), a new species from mountain tops of Hainan Island, South China

PhytoKeys ◽  
2020 ◽  
Vol 157 ◽  
pp. 121-135
Author(s):  
Shao-Jun Ling ◽  
Shu-Ping Guan ◽  
Fang Wen ◽  
Yu-Min Shui ◽  
Ming-Xun Ren
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
South China ◽  
Hainan Island ◽  
The Other ◽  
Molecular Phylogenetic Analysis ◽  
Floral Tube ◽  
Floral Isolation ◽  
Molecular Phylogenetic ◽  
A New Species

A new species of Gesneriaceae, Oreocharis jasminina S.J.Ling, F.Wen & M.X. Ren from Hainan Island, south China, is highlighted and described. The new species is distinguished by its actinomorphic corolla, narrow floral tube and ovate anthers hidden in the floral tube. The new species also showed clear geographic and altitudinal isolation from the three currently-recognised Oreocharis species on the Island. Molecular phylogenetic analysis, based on nuclear ITS1/2 and plastid trnL-trnF sequences, supported the delimitation of the new species, which forms a single lineage with all the other Oreocharis species from Hainan Island. The roles of geographic and floral isolation in the evolution of the new species and its affinities are discussed.

scholarly journals Phylogenetic study of endophytic fungi associated with Centella asiatica from Bengkulu and Malaysian accessions based on the ITS rDNA sequence

2019 ◽  
Vol 20 (5) ◽  
Author(s):  
NANI RADIASTUTI ◽  
DWI NINGSIH SUSILOWATI ◽  
HUSHSHILA A BAHALWAN
Keyword(s):  
Phylogenetic Analysis ◽  
Medicinal Plants ◽  
Endophytic Fungi ◽  
Fungal Endophytes ◽  
Centella Asiatica ◽  
Rdna Sequence ◽  
Its Rdna ◽  
Molecular Phylogenetic Analysis ◽  
Phylogenetic Study ◽  
Molecular Phylogenetic

Abstract. Radiastuti N, Bahalwan HA, Susilowati DN. 2019. Phylogenetic study of endophytic fungi associated with Centella asiatica from Bengkulu and Malaysian accessions based on the ITS rDNA sequence. Biodiversitas 20:  1248-1258. Centella asiatica is one of the medicinal plants which is known to be symbiotic with various endophytic fungi. The purpose of this research was to determine diversity of culturable fungal endophyte from C. asiatica. Identification was conducted using molecular phylogenetic analysis based on the ITS rDNA sequence. The result showed that obtained 145 isolates endophytic fungi (from stolons, leaves, roots, petioles) were grouped into 18 morphotaxa (Bengkulu) and 23 morphotaxa (Malaysian). The fungal endophytic were identified as Aspergillus austroafricanus, Aspergillus oryzae, Acrocalymma vagum, Ceratobasidium cornigerum, Ceratobasidium sp., Chaetomium globosum, Colletotrichum karstii, C. gigasporium, C. tabaci, Colletotrichum siamense, Eutypella sp., Fusarium solani, F. oxysporum, F. falciforme, F. keratoplasticum, F. striatum, Fusarium sp., Penicillium capsulatum, Phoma multirostrata, Perenniporia tephropora, Perenniporia sp., Phanerochaete chrysosporium, Phanerochaete stereoides, Phyllosticta capitalensis, Phomopsis asparagi, Peroneutypa scoparia, Phialemoniopsis sp., Mycochaetophora gentinae, Talaromyces sp., Earliella scabrosa, and Trichaptum sp. based on molecular phylogenetic analysis. Fusarium (Nectriaceae) were the most found of fungal endophytes in both C. asiatica Bengkulu and Malaysian accession. The majority strain are including Ascomycetes and Basidiomycetes. The identification of endophytic fungi from medicinal plants is needed as a preliminary study to determine the potential of endophytic fungi producing bioactive compounds.

scholarly journals Two Complete Mitochondrial Genomes of Mileewinae (Hemiptera: Cicadellidae) and a Phylogenetic Analysis

Insects ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 668
Author(s):  
Tinghao Yu ◽  
Yalin Zhang
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Relationships ◽  
Phylogenetic Trees ◽  
Strong Support ◽  
Intergenic Spacer ◽  
Taxonomic Status ◽  
Start Codon ◽  
Gene Arrangement ◽  
Mitochondrial Genomes ◽  
Protein Coding

More studies are using mitochondrial genomes of insects to explore the sequence variability, evolutionary traits, monophyly of groups and phylogenetic relationships. Controversies remain on the classification of the Mileewinae and the phylogenetic relationships between Mileewinae and other subfamilies remain ambiguous. In this study, we present two newly completed mitogenomes of Mileewinae (Mileewa rufivena Cai and Kuoh 1997 and Ujna puerana Yang and Meng 2010) and conduct comparative mitogenomic analyses based on several different factors. These species have quite similar features, including their nucleotide content, codon usage of protein genes and the secondary structure of tRNA. Gene arrangement is identical and conserved, the same as the putative ancestral pattern of insects. All protein-coding genes of U. puerana began with the start codon ATN, while 5 Mileewa species had the abnormal initiation codon TTG in ND5 and ATP8. Moreover, M. rufivena had an intergenic spacer of 17 bp that could not be found in other mileewine species. Phylogenetic analysis based on three datasets (PCG123, PCG12 and AA) with two methods (maximum likelihood and Bayesian inference) recovered the Mileewinae as a monophyletic group with strong support values. All results in our study indicate that Mileewinae has a closer phylogenetic relationship to Typhlocybinae compared to Cicadellinae. Additionally, six species within Mileewini revealed the relationship (U. puerana + (M. ponta + (M. rufivena + M. alara) + (M. albovittata + M. margheritae))) in most of our phylogenetic trees. These results contribute to the study of the taxonomic status and phylogenetic relationships of Mileewinae.

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