A new species-level taxonomy forTrapelia(Trapeliaceae, Ostropomycetidae) with special reference to Great Britain and the Falkland Islands

2018 ◽  
Vol 50 (1) ◽  
pp. 3-42 ◽  
Author(s):  
Alan ORANGE

AbstractTrapeliais a small genus of worldwide distribution.Trapelia coarctatahas long been regarded as a morphologically variable species and phylogenetic studies have suggested that it is non-monophyletic, or at least that species are frequently misidentified. The phylogenetic relationships of freshly-collected material ofTrapeliawere studied using ITS, mitochondrial SSU rDNA and to a small extent also beta-tubulin sequence data, together with chemical and morphological characters. Sequence data combined with morphology and chemistry confirm that the diversity of the genus at species-level has been underestimated.Trapelia coarctatais defined in a more restricted way and many specimens previously referable to this taxon are assigned to the reinstated speciesT. elacista, which differs in subtle morphological characters including a crack separating the thallus and apothecium in well-developed thalli.Trapelia involutais reinstated as a separate, though closely related, species toT. glebulosabased on sequence data, morphology and chemistry, and is lectotypified.Trapelia collarisis a distinctive species described as new from Great Britain which has an extensive, cracked thallus with abruptly thickening marginal areoles arising on an inconspicuous prothallus, relatively small apothecia (rarely exceeding 300 µm diameter) and contains 5-O-methylhiascic acid as the major secondary substance.Trapelia obtegensis shown to include frequent non-sorediate morphs which have doubtless been misidentified as other species. The number of species ofTrapeliaconsidered to occur in Europe is thus raised from five to eight. The genus is newly reported for the Falkland Islands where seven species occur:T. coarctata,T. placodioides,T. sitienssp. nov. (with a thin, extensive thallus, sessile apothecia, 5-O-methylhiascic acid as the major secondary substance and the presence of conidiomata),T. tristissp. nov. (with relatively small apothecia up to 460 µm diameter, presence of gyrophoric acid as the major substance and an absence of conidiomata) and three unidentified species represented by very sparse material. All the species studied, with the possible exception of the three unidentified species, can usually be distinguished by morphological features, particularly the method of development of the thallus and the shape and distribution of the areoles, but morphological variation in response to microhabitat variation is likely to make a proportion of specimens difficult to assign to species in the absence of sequence data.

Zootaxa ◽  
2010 ◽  
Vol 2648 (1) ◽  
pp. 45 ◽  
Author(s):  
PETER A. LARSEN ◽  
MARÍA R. MARCHÁN-RIVADENEIRA ◽  
ROBERT J. BAKER

Fruit-eating bats of the genus Artibeus are widely distributed across the Neotropics and are one of the most recently evolved assemblages of the family Phyllostomidae. Although the taxonomy and systematics of species of Artibeus has been the subject of an intense historical debate, the most current taxonomic arrangements recognize approximately eleven species within the genus. However, recent phylogenetic studies indicate that species diversity within South and Middle American populations of Artibeus is underestimated. South American populations referable to A. jamaicensis aequatorialis are of considerable interest because previous studies of mitochondrial DNA variation identified potential species level variation west of the Andes Mountains. In this study we use morphometric and genetic data (nuclear AFLPs) to investigate the taxonomic status of A. j. aequatorialis. Our results indicate that elevating aequatorialis to species level is appropriate based on statistically supported reciprocal monophyly in mitochondrial and nuclear datasets and diagnostic morphological characters. In light of our results, and of those presented elsewhere, we provide a revised classification of the genus.


MycoKeys ◽  
2018 ◽  
Vol 33 ◽  
pp. 69-84 ◽  
Author(s):  
Andre Aptroot ◽  
Michael Stech

In the course of a multi-taxon biodiversity inventory for the island of St. Eustatius, lichens were collected from 11 plots representing different vegetation types. From these collections, 126 lichen species are reported, 54 of which are new reports for St. Eustatius. Most species could be identified to species level based on morphological and chemical characters. In a few cases, mtSSU DNA sequences were generated for a preliminary molecular identification and future phylogenetic studies. In total, 263 identified lichen species are currently known from St. Eustatius, as well as some additional genera with yet unidentified species and lichenicolous fungi.


2021 ◽  
Author(s):  
Esmail Khaledi ◽  
Jamal Nahvi Moghadam ◽  
Jafar Abdollahzadeh ◽  
Jahanshir Amini

Abstract Grapevine trunk diseases (GTDs) are destructive and important economically with worldwide distribution. In this survey 233 fungal isolates were obtained from grapevine cultivars showing trunk diseases symptoms in Kurdistan Province, Iran. Based on sequences data and morphology 24 species belong to 20 genera were characterized. Botryosphaeriaceae, Alternaria, Sporocadaceae and Phaeoacremonium members were the most prevalent identified fungal groups. At the species level Botryosphaeria dothidea, Alternaria malorum, Phaeoacremonium aleophilum and Acremonium sclerotigenum were the most frequent identified species. All species are new records in Kurdistan Province. Clonostachys rosea and Neoscytalidium novaehollandiae are new records on grapevine in Iran. Acremonium sclerotigenum, Alternaria chlamydosporigena, Ascochyta herbicola and Paecilomyces formosus are new records on grapevine around the world. In phylogenetic analyses based on LSU, ITS, TEF-1α and TUB2 sequence data four pestalotioid species belong to Sporocadaceae were identified. Of these, three species are new for science and introduced here as Seimatosporium marivanicum, Sporocadus kurdistani and Xenoseimatosporium kurdistanicum. Furthermore, three new combinations in Sporocadus are proposed.


Zootaxa ◽  
2020 ◽  
Vol 4860 (1) ◽  
pp. 116-128
Author(s):  
KE LI ◽  
MIN YU ◽  
YA-YONG WU ◽  
LIN-HONG LIAO ◽  
KUI TANG ◽  
...  

A new species of the xenodermatid snake genus Achalinus Peters, 1869 is described from Yunnan Province, Southwest China, based on a single male specimen. The new species is assigned to the genus Achalinus on the basis of absence of preocular and postocular, subcaudals arranged in single row, and results of phylogenetic analyses of mitochondrial DNA CO1 sequence data. Achalinus pingbianensis sp. nov. differs from its congeners by the combination of following morphological characters: absence of a loreal, internasals subequal to that between prefrontals and dorsal scales strongly keeled, 23 rows throughout. Currently, 13 species are in the genus Achalinus, further taxonomical and phylogenetic studies based on more extensive samples and more markers will help understand the cryptic diversity and clarify their interspecific relationships. 


2006 ◽  
Vol 31 (3) ◽  
pp. 449-460 ◽  
Author(s):  
Sara B. Hoot ◽  
W. Carl Taylor ◽  
Nancy S. Napier

Despite its ancient origins, worldwide distribution, and adaptation to diverse habitats, Isoëtes species have a highly conserved morphology, making it difficult to resolve phylogenetic relationships using morphological characters. In this paper, we report the results from various analyses (maximum parsimony, maximum likelihood, and Bayesian inference) for Isoëtes species from around the world based on nucleotide sequences from the nuclear internal transcribed spacer (ITS) and chloroplast atpB/rbcL intergenic spacer regions. The trees resulting from our analyses of the combined data contain six major well-supported clades (bootstrap ≥ 90%, posterior probabilities 1.00): A clade with possible Gondwanan affinities (I. australis, I. coromandelina, I. panamensis, I. cubana, I. jamaicensis); a South African clade (I. capensis, I. toximontana, I. stellenbossiensis, I. stephansenii); a largely Northern Hemisphere clade (I. nuttallii, I. orcuttii, I. minima, I. dixitei, I. abyssinica, I. olympica, I. longissima, I. velata); an Asian/Australasian clade (I. drummondii, I. gunnii, I. pusilla, I. kirkii, I. muelleri, I. taiwanensis, I. japonica, I. yunguiensis, I. habbemensis); a Mediterranean clade (I. histrix and I. setacea); and a poorly resolved clade consisting of 12 new world species (American species complex). Our results are compared to past classifications and various biogeographical scenarios are explored.


Phytotaxa ◽  
2021 ◽  
Vol 516 (1) ◽  
pp. 59-72
Author(s):  
QIU-JU SHANG ◽  
KEVIN D. HYDE ◽  
JIAN-KUI LIU

Phaeoacremonium species are important pathogens with a worldwide distribution and diverse host and are commonly associated with brown wood streaking, dieback and Esca disease of plants and phaeohyphomycosis of humans. In this study, three sexual taxa, representing two Phaeoacremonium species, were collected from dead wood from Guangdong and Guizhou Provinces in China. Based on the morphological characters and phylogenetic analyses of a combined ACT and TUB2 sequence data, they are identified as Phaeoacremonium fusiformostromum sp. nov., and P. croatiense, which is a new record from China with its first sexual morph. Detailed descriptions and illustrations of these two species are provided, and an updated phylogenetic tree for all Phaeoacremonium species is also given.


Phytotaxa ◽  
2017 ◽  
Vol 307 (2) ◽  
pp. 123
Author(s):  
PETER B. HEENAN ◽  
TERRY D. MACFARLANE ◽  
ANDREA L. CASE ◽  
SEAN W. GRAHAM ◽  
ANNIKA VINNERSTEN ◽  
...  

The new combination Wurmbea novae-zelandiae was recently made based on published phylogenetic studies, but little information was provided on its relationships based on morphology. This species was originally described as Anguillaria novae-zelandiae, for which a lectotype is designated. Morphological characters of W. novae-zelandiae are re-evaluated and shown to be characteristic of Wurmbea, thereby supporting the revised generic placement. However, W. novae-zelandiae differs from all other Wurmbea species in its diminutive stature, fewer tepals and stamens, and variable floral morphology, with 1–3 carpels, often leaf-like tepals, and aberrant tepal shape and number. DNA sequence data places W. novae-zelandiae as the sister species of W. uniflora, a species not included in earlier phylogenetic studies. These two species share mostly solitary flowers with white tepals, nectaries two per tepal and similar in form and position, small yellow anthers, and styles that are relatively short and recurve as flowering proceeds, with the inner style surface stigmatic for up to half of its length. A revised generic description of Wurmbea is provided to take account of the recently widened concept.


Nematology ◽  
2006 ◽  
Vol 8 (6) ◽  
pp. 921-938 ◽  
Author(s):  
S. Patricia Stock ◽  
Steven Nadler

AbstractThe genus Panagrellus currently comprises 12 known species. These nematodes have a worldwide distribution and have been found in a variety of habitats such as slime flux, thermal springs, insect frass and spoiled cider. Diagnosis of Panagrellus species is rather problematic since few morphological features can be used to discriminate between species and the original publications do not indicate the number of specimens measured and lack standard descriptions of variance. In this study we review the taxonomic status of several species from this genus combining classical morphological data and molecular sequences. Eleven live isolates and fixed material from currently available type specimens representing six Panagrellus species were included. Morphological analysis included the examination of qualitative and quantitative characters of males and females. The taxonomic utility of morphometric data was evaluated by means of multivariate statistics (principal component and canonical discriminant analyses). Phylogenetic inference was based on analysis of nucleotide sequences from the LSU rDNA gene and morphological characters. Parsimony tree topologies inferred from nucleotide datasets strongly supported monophyly of the P. dubius isolates, but not the P. redivivus isolates. Phylogenetic interpretation of these rDNA sequence data suggests that both the P. redivivus and P. dubius isolates each include more than a single species. Only two of the 15 morphological characters evaluated were variable within the ingroup taxa. A long spicule bifurcation length maps on the combined evidence trees as a putative synapmorphy for P. dubius, whereas male D% was homoplastic within isolates of that species. The diagnosis of the genus Panagrellus is emended.


ZooKeys ◽  
2020 ◽  
Vol 908 ◽  
pp. 45-122
Author(s):  
Remko Leijs ◽  
James Dorey ◽  
Katja Hogendoorn

The species in the subgenus Amegilla (Asaropoda) are revised. Species delineation was decided based on diagnostic morphological characters as well as an incomplete phylogeny based on mitochondrial cytochrome oxidase 1 sequence data. Strong support was obtained for separating the Australian species of Amegilla into the three subgenera previously proposed on the basis of morphology. The subgenus Asaropoda was found to comprise 21 species, including ten new species: A. albiclypeata Leijs, sp. nov., A. aurantia Leijs, sp. nov., A. batleyi Leijs, sp. nov., A. crenata Leijs, sp. nov., A. griseocincta Leijs, sp. nov., A. incognita Leijs, sp. nov., A. nitidiventris Leijs, sp. nov., A. scoparia Leijs, sp. nov., A. xylocopoides Leijs, sp. nov., and A. youngi Leijs, sp. nov. The subspecies A. preissi frogatti is raised to species level, and 16 new synonymies are proposed. Keys to the species of both sexes and descriptions or redescriptions are provided. Distribution maps, data on flower visitation and phenology are given.


Author(s):  
D. G. Melnikov ◽  
L. I. Krupkina

Based on the published data of molecular phylogenetic studies of the tribe Cariceae Dumort. genera (Cyperaceae), obtained by an international collaboration (The Global Carex Group, 2016; et al.), and morphological characters of the genera (Kukkonen, 1990; and others), new nomenclatural combinations and replacement names in the genus Carex L. are published for 11 species, one subspecies and two sections previously included in the genus Kobresia Willd.


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