scholarly journals Diet and association of Pontonia pinnophylax occurring in Pinna nobilis: insights from stable isotope analysis

2001 ◽  
Vol 81 (1) ◽  
pp. 177-178 ◽  
Author(s):  
H. Kennedy ◽  
C.A. Richardson ◽  
C.M. Duarte ◽  
D.P. Kennedy
Keyword(s):  
Stable Carbon Isotope ◽  
Isotope Analysis ◽  
Carbon Sources ◽  
Posidonia Oceanica ◽  
Mantle Cavity ◽  
Trophic Levels ◽  
Stable Carbon ◽  
Pinna Nobilis ◽  
Wide Range ◽  
Sea Grass

Stable carbon isotope measurements (δ13C) were used to assess the sources of carbon assimilated by the fan mussel Pinna nobilis, in sea grass Posidonia oceanica meadows, and an associated shrimp Pontonia pinnophylax which occurs within this bivalve's mantle cavity. The primary carbon sources available to both animals displayed a wide range of δ13C values, from −12·3 to −22·3‰. The δ13C and δ15N of Pinna nobilis and Pontonia pinnophylax suggest that they assimilate carbon from similar sources, occupy comparable trophic levels and that their association is commensal.

Stable Carbon Isotope Studies on the Pecks Cove Mudflat Ecosystem in the Cumberland Basin, Bay of Fundy

1983 ◽  
Vol 40 (S1) ◽  
pp. s262-s272 ◽  
Author(s):  
Peter Schwinghamer ◽  
Francis C. Tan ◽  
Donald C. Gordon Jr.
Keyword(s):  
Carbon Isotope ◽  
Suspended Matter ◽  
Stable Carbon Isotope ◽  
Carbon Sources ◽  
Trophic Levels ◽  
Benthic Diatoms ◽  
Bay Of Fundy ◽  
Intertidal Mudflat ◽  
Relative Importance ◽  
Stable Carbon

Ratios of stable carbon isotopes (δ 13C) have been measured in components of an intertidal mudflat ecosystem located near the head of the Bay of Fundy. Special attention was given to the isolation and analysis of carbon source materials including phytoplankton, benthic algae, marsh grass (Spartina alterniflora), size-fractionated detritus, and "mineral" sediment. Bulk sediment and suspended matter were also analyzed. For most of the year the two major primary producers, Spartina and benthic diatoms (dominated by Gyrosigma spp.), had similar δ 13C values (−13 to −14‰). Some Spartina detritus, presumably "fresh" material, also had similar δ 13C values. It was therefore imposible to estimate the relative importance of carbon from these sources to the nutrition of consumer organisms. Zooplankton, benthic-feeding fish, and benthic fauna had δ 13C values mostly in the range of −12 to −15‰, suggesting that live Spartina, "fresh" detritus, and benthic diatoms could be major carbon sources. Phytoplankton and other isotopically light carbon sources including "aged" detritus, bulk and "mineral" sediment, do not appear to be major carbon sources for mudflat organisms. We found Spartina detritus to be abundant both in sediments and suspended matter outside the salt marshes, but the δ 13C values of most of the detritus were much lighter (−17 to −20‰) than those of live Spartina. The mechanism of this isotopic alteration is not known and we were not able to demonstrate it clearly in laboratory experiments. Although the δ 13C method has helped to assess the relative importance of some isotopically distinct carbon sources, we were unable to detect any 13C enrichment in various trophic levels of mudflat organisms and benthic-feeding fish.Key words: stable carbon isotope ratio, detritus, decomposition, mudflat ecosystem, Pecks Cove, Bay of Fundy

Factors affecting 13C/12C ratios of inland halophytes. I. Controlled studies on growth and isotopic composition of Puccinellia nuttalliana

1986 ◽  
Vol 64 (11) ◽  
pp. 2693-2699 ◽  
Author(s):  
Robert D. Guy ◽  
David M. Reid ◽  
H. Roy Krouse
Keyword(s):  
Isotope Composition ◽  
Stable Carbon Isotope ◽  
Isotope Analysis ◽  
Research Problem ◽  
Carbon Isotope Composition ◽  
Stable Carbon ◽  
Factors Affecting ◽  
Plant Parts ◽  
High Level ◽  
Puccinellia Nuttalliana

Studies on various factors affecting the growth and stable carbon isotope composition of the graminaceous C3 halophyte Puccinellia nuttalliana (Schultes) Hitch. were initiated as a step towards interpreting δ13C variations in nature. For isotope analysis, combustion at 900 °C resulted in higher CO2 yield than at 550 °C but did not affect δ13C values. Differences in δ13C between leaves of different insertion level were unimportant, but roots were about 1‰ more positive than shoots. Trends in δ13C with salinity were the same in all plant parts. Depressions of growth by NaCl or Na2SO4 were similar, but plants grown in Na2SO4 displayed a greater shift in δ13C relative to controls. Growth rates were affected more by salinity than were previously reported photosynthetic rates. At typical salinities, δ13C changed linearly with salinity. The supply of nitrate to stressed and unstressed plants had no important influence on δ13C. Growth in polyethylene glycol produced δ13C values consistent with a high level of stress. After a salinity step-up, changes in δ13C were complete within 10 days. During winter, data were found to be heavily influenced by unintentional, human-respired CO2 enrichment. This represents a potentially serious research problem in laboratories of temperate climes.

scholarly journals A metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities

2018 ◽  
Author(s):  
Manuel Kleiner ◽  
Xiaoli Dong ◽  
Tjorven Hinzke ◽  
Juliane Wippler ◽  
Erin Thorson ◽  
...  
Keyword(s):  
Microbial Community ◽  
Microbial Communities ◽  
Carbon Isotope ◽  
Isotope Ratio ◽  
Single Cells ◽  
Stable Carbon Isotope ◽  
Carbon Sources ◽  
Food Sources ◽  
Individual Species ◽  
Stable Carbon

AbstractMeasurements of the carbon stable isotope ratio (δ13C) are widely used in biology to address major questions regarding food sources and metabolic pathways used by organisms. Measurement of these so called stable carbon isotope fingerprints (SIFs) for microbes involved in biogeochemical cycling and microbiota of plants and animals have led to major discoveries in environmental microbiology. Currently, obtaining SIFs for microbial communities is challenging as the available methods either only provide limited taxonomic resolution, such as with the use of lipid biomarkers, or are limited in throughput, such as NanoSIMS imaging of single cells.Here we present “direct Protein-SIF” and the Calis-p software package (https://sourceforge.net/projects/calis-p/), which enable high-throughput measurements of accurate δ13C values for individual species within a microbial community. We benchmark the method using 20 pure culture microorganisms and show that the method reproducibly provides SIF values consistent with gold standard bulk measurements performed with an isotope ratio mass spectrometer. Using mock community samples, we show that SIF values can also be obtained for individual species within a microbial community. Finally, a case study of an obligate bacteria-animal symbiosis showed that direct Protein-SIF confirms previous physiological hypotheses and can provide unexpected new insights into the symbionts’ metabolism. This confirms the usefulness of this new approach to accurately determine δ13C values for different species in microbial community samples.SignificanceTo understand the roles that microorganisms play in diverse environments such as the open ocean and the human intestinal tract, we need an understanding of their metabolism and physiology. A variety of methods such as metagenomics and metaproteomics exist to assess the metabolism of environmental microorganisms based on gene content and gene expression. These methods often only provide indirect evidence for which substrates are used by a microorganism in a community. The direct Protein-SIF method that we developed allows linking microbial species in communities to the environmental carbon sources they consume by determining their stable carbon isotope signature. Direct Protein-SIF also allows assessing which carbon fixation pathway is used by autotrophic microorganisms that directly assimilate CO2.

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