The salmon louse genome may be much larger than sequencing suggests

The genome size of organisms impacts their evolution and biology and is often assumed to be characteristic of a species. Here we present the first published estimates of genome size of the ecologically and economically important ectoparasite, Lepeophtheirus salmonis (Copepoda, Caligidae). Four independent L. salmonis genome assemblies of the North Atlantic subspecies Lepeophtheirus salmonis salmonis, including two chromosome level assemblies, yield assemblies ranging from 665 to 790 Mbps. These genome assemblies are congruent in their findings, and appear very complete with Benchmarking Universal Single-Copy Orthologs analyses finding over 92% of expected genes and transcriptome datasets routinely mapping over 90% of reads. However, two cytometric techniques, flow cytometry and Feulgen image analysis densitometry, yield measurements in the range of 1.3 to 1.6 Gb in the haploid genome. Interestingly, earlier cytometric measurements reported genome sizes of 939 and 567 Mbps in L. salmonis salmonis samples from Bay of Fundy and Norway, respectively. Available data thus suggest that the genome sizes of salmon lice are variable. Current understanding of eukaryotic genome dynamics suggests that the most likely explanation for such variability involves repetitive DNA, which for L. salmonis makes up approx. 60% of the genome assemblies.

Food web incorporation of marine-derived nutrients after the reintroduction of endangered inner Bay of Fundy Atlantic salmon (Salmo salar)

Inner Bay of Fundy Atlantic salmon (Salmo salar) are endangered anadromous fish that have the potential to provide marine-derived nutrients (MDNs) to freshwater ecosystems depending on their population abundance. Salmon have been reintroduced to the Upper Salmon River, but not the adjacent Point Wolfe River, in Fundy National Park, New Brunswick, Canada. This study determined whether stocking of adult salmon increased the productivity of the river. To examine the incorporation of MDNs, biofilm, leaf litter, Perlidae, Heptageniidae and brook trout (Salvelinus fontinalis) were sampled pre- and post-spawning in 2015-2017 from down- and up-stream of a natural barrier in both rivers and analyzed for carbon (δ13C) and nitrogen (δ15N) isotopes. After salmon spawning in each year, all organisms at the downstream site of the stocked river increased in δ13C and δ15N, with the greatest enrichment in brook trout (δ13C -23.97 to -21.10‰, δ15N +6.36 to +10.73‰). The proportion of MDNs in brook trout after salmon spawning (2015: 23.4%, 2016: 40.7%, 2017: 37.4%) also increased with higher numbers of released adult salmon. Results support the importance of salmon restoration for increasing the proportion of MDNs and productivity in rivers in Atlantic Canada.

Hitchhiking Halophytes in Wrack and Sediment-Laden Ice Blocks Contribute To Tidal Marsh Development in The Upper Bay of Fundy.

Salt marshes are a type of coastal wetland that are affected by dynamic coastal processes. Ice blocks and wrack (mats of plant debris) regularly float onto northern marshes and become stranded, affecting vegetation and soil accretion. There is little research regarding the capacity of ice and wrack to transport viable plant propagules onto marshes where they can colonize, which may be particularly important at barren new salt marsh restoration sites. Contributions of sediment by ice may also be important at restoration sites to raise the marsh platform to elevations appropriate for plant colonization. We collected ice (n = 27) and wrack (n = 18) samples at marshes in the Bay of Fundy, ran germination trials with the contents, and measured the quantity of sediment in the ice. We found viable propagules from halophytic and non-halophytic species in wrack, and viable propagules of Sporobolus pumilus in ice. Additionally, we found sediment densities between 0.01 and 4.75 g·cm−3 in ice blocks that translated to 26.61 – 21,483.59 kg of total sediment per block, representing a large source of sediment. We found that the number of germinating propagules could not be predicted by wrack size, and that pH, sediment density, sediment weight in ice blocks were variable across the marsh surface, while ice salinity was negatively correlated with elevation and distance from creek. Our results indicate that ice and wrack represent a potential source for vegetation colonization at salt marsh sites and highlights their contributions to facilitating vegetation colonization through building marsh soils.

Rapid carbon accumulation at a saltmarsh restored by managed realignment far exceeds carbon emitted in site construction

Increasing attention is being paid to the carbon sequestration and storage services provided by coastal blue carbon ecosystems such as saltmarshes. Sites restored by managed realignment, where existing sea walls are breached to reinstate tidal inundation to the land behind, have considerable potential to accumulate carbon through deposition of sediment brought in by the tide and burial of vegetation in the site. While this potential has been recognised, it is not yet a common motivating factor for saltmarsh restoration, partly due to uncertainties about the rate of carbon accumulation and how this balances against the greenhouse gases emitted during site construction. We use a combination of field measurements over four years and remote sensing to quantify carbon accumulation at a large managed realignment site, Steart Marshes, UK. Sediment accumulated rapidly at Steart Marshes (mean of 75 mm yr-1) and had a high carbon content (4.4% total carbon, 2.2% total organic carbon), resulting in carbon accumulation of 36.6 t ha-1 yr-1 total carbon (19.4 t ha-1 yr-1 total organic carbon). This rate of carbon accumulation is an order of magnitude higher than reported in many other restored saltmarshes, and is higher although more similar to values previously reported from another hypertidal system (Bay of Fundy, Canada). The estimated carbon emissions associated with the construction of the site were ~2-4% of the observed carbon accumulation during the study period, supporting the view that managed realignment projects in such settings are likely to have significant carbon accumulation benefits. We outline further considerations that are needed to move towards a full carbon budget for saltmarsh restoration.

Seasonal occurrence of waterbirds in Minas Passage, Bay of Fundy, Nova Scotia, Canada, 2010 to 2012

We determined patterns of seasonal abundance and diversity of seabirds and coastal waterfowl in Minas Passage, Bay of Fundy, Nova Scotia, Canada using quantitative, shore-based point surveys from mid-March to late August and mid-October to December 2010 to 2012. This area experiences the world’s highest tides and greatest tidal currents. We showed that species and seasonal cycles of waterbirds in Minas Passage reflect patterns typical of the inner Bay of Fundy and the northeast Atlantic coast of North America. The study highlights the importance of Minas Passage as an important local migration pathway for waterbirds including Black Scoter (Melanitta americana) and Red-throated Loon (Gavia stellata) passing through the Bay of Fundy. Large numbers of sea ducks (Black Scoter, Surf Scoter [Melanitta perspicillata], White-winged Scoter (Melanitta fusca), and Long-tailed Duck [Clangula hyemalis]), and Red-throated Loon were observed at the site in spring and fall, corresponding to known peak movements elsewhere in the Bay of Fundy. Fewest species and smallest abundances of waterbirds overall occurred in summer and early winter, while most species and largest abundances occurred in April-May and early November. Of the 46 species observed, resident breeders such as Herring Gull (Larus argentatus), Great Black-backed Gull (Larus marinus), Common Eider (Somateria mollissima), Black Guillemot (Cepphus grylle), and Double-crested Cormorant (Phalacrocorax auritus), were most abundant in spring to early summer during breeding and migrants including Red-throated Loon, Black Scoter, Ring-billed Gull (Larus delawarensis), Surf Scoter, and Northern Gannet (Morus bassanus) occurred in moderate numbers during migration periods.

Two new species of encrusting sponge (Porifera, family Crellidae) from eastern Canada

Two new species of Crellidae Dendy, 1922 from the east coast of Canada are described. The first is Crella (Pytheas) cutis sp. nov., a massively encrusting species of Crella (Pytheas) collected from depths of 84 to 249 m in the Gulf of St. Lawrence and on the Scotian Shelf. The second is Crellomima mehqisinpekonuta sp. nov., a thinly encrusting sponge found at diving depths in the Bay of Fundy. We also report the first records of Crellomima derma Hentschel, 1929 from outside the type locality (Barents Sea). All known species of Crellomima are reviewed based on type material.

"Sustainable but just on the edge" : assessing the sustainability of the commercial whale-watching industry in the Lower Bay of Fundy, New Brunswick, Canada

"Sustainable but just on the edge" : assessing the sustainability of the commercial whale-watching industry in the Lower Bay of Fundy, New Brunswick, Canada

"Sustainable but just on the edge" : assessing the sustainability of the commercial whale-watching industry in the Lower Bay of Fundy, New Brunswick, Canada

"Sustainable but just on the edge" : assessing the sustainability of the commercial whale-watching industry in the Lower Bay of Fundy, New Brunswick, Canada