Prediction of Protein Complex Structure Using Surface-Induced Dissociation and Cryo-Electron Microscopy

Author(s):  
Justin T. Seffernick ◽  
Shane M. Canfield ◽  
Sophie R. Harvey ◽  
Vicki H. Wysocki ◽  
Steffen Lindert
Cell ◽  
1997 ◽  
Vol 90 (2) ◽  
pp. 217-224 ◽  
Author(s):  
Hernando Sosa ◽  
D.Prabha Dias ◽  
Andreas Hoenger ◽  
Michael Whittaker ◽  
Elizabeth Wilson-Kubalek ◽  
...  

2013 ◽  
Vol 46 (49) ◽  
pp. 494008 ◽  
Author(s):  
Yi-Min Wu ◽  
Chun-Hsiung Wang ◽  
Jen-wei Chang ◽  
Yi-yun Chen ◽  
Naoyuki Miyazaki ◽  
...  

2015 ◽  
Vol 108 (2) ◽  
pp. 514a
Author(s):  
Mario J. Borgnia ◽  
Soojay Banerjee ◽  
Prashant Rao ◽  
Alberto Bartesaghi ◽  
Allan Merk ◽  
...  

2020 ◽  
Author(s):  
Shintaroh Kubo ◽  
Shun Kai Yang ◽  
Corbin Black ◽  
Daniel Dai ◽  
Melissa Valente ◽  
...  

Cilia are thin microtubule-based protrusions of eukaryotic cells, beating at high frequency to propel the cell in sperms or clear mucus in the respiratory tract. The ciliary beating is driven by the outer arm dynein arms (ODAs) which anchor on the doublet microtubules. Here, we report the ODA complex structure from the native doublet microtubules by cryo-electron microscopy. Our structure reveals how the ODA complex is attached to the doublet microtubule via the docking complex in its native state. Combined with molecular dynamics simulations, we present a model of how the attachment of the ODA complex to the doublet microtubule induces rearrangements and activation mechanisms within the ODA complex.


Cell Research ◽  
2020 ◽  
Vol 30 (12) ◽  
pp. 1136-1139
Author(s):  
Kaiming Zhang ◽  
Grigore D. Pintilie ◽  
Shanshan Li ◽  
Michael F. Schmid ◽  
Wah Chiu

2019 ◽  
Vol 5 (8) ◽  
pp. 1330-1341 ◽  
Author(s):  
Justin T. Seffernick ◽  
Sophie R. Harvey ◽  
Vicki H. Wysocki ◽  
Steffen Lindert

Author(s):  
Joachim Frank

Compared with images of negatively stained single particle specimens, those obtained by cryo-electron microscopy have the following new features: (a) higher “signal” variability due to a higher variability of particle orientation; (b) reduced signal/noise ratio (S/N); (c) virtual absence of low-spatial-frequency information related to elastic scattering, due to the properties of the phase contrast transfer function (PCTF); and (d) reduced resolution due to the efforts of the microscopist to boost the PCTF at low spatial frequencies, in his attempt to obtain recognizable particle images.


Author(s):  
Marc J.C. de Jong ◽  
Wim M. Busing ◽  
Max T. Otten

Biological materials damage rapidly in the electron beam, limiting the amount of information that can be obtained in the transmission electron microscope. The discovery that observation at cryo temperatures strongly reduces beam damage (in addition to making it unnecessaiy to use chemical fixatives, dehydration agents and stains, which introduce artefacts) has given an important step forward to preserving the ‘live’ situation and makes it possible to study the relation between function, chemical composition and morphology.Among the many cryo-applications, the most challenging is perhaps the determination of the atomic structure. Henderson and co-workers were able to determine the structure of the purple membrane by electron crystallography, providing an understanding of the membrane's working as a proton pump. As far as understood at present, the main stumbling block in achieving high resolution appears to be a random movement of atoms or molecules in the specimen within a fraction of a second after exposure to the electron beam, which destroys the highest-resolution detail sought.


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