scholarly journals Localization of Small Ligands in a Metabolic Protein Complex using Cryo-Electron Microscopy

2015 ◽  
Vol 108 (2) ◽  
pp. 514a
Author(s):  
Mario J. Borgnia ◽  
Soojay Banerjee ◽  
Prashant Rao ◽  
Alberto Bartesaghi ◽  
Allan Merk ◽  
...  
Cell ◽  
1997 ◽  
Vol 90 (2) ◽  
pp. 217-224 ◽  
Author(s):  
Hernando Sosa ◽  
D.Prabha Dias ◽  
Andreas Hoenger ◽  
Michael Whittaker ◽  
Elizabeth Wilson-Kubalek ◽  
...  

2013 ◽  
Vol 46 (49) ◽  
pp. 494008 ◽  
Author(s):  
Yi-Min Wu ◽  
Chun-Hsiung Wang ◽  
Jen-wei Chang ◽  
Yi-yun Chen ◽  
Naoyuki Miyazaki ◽  
...  

Author(s):  
Justin T. Seffernick ◽  
Shane M. Canfield ◽  
Sophie R. Harvey ◽  
Vicki H. Wysocki ◽  
Steffen Lindert

Cell Research ◽  
2020 ◽  
Vol 30 (12) ◽  
pp. 1136-1139
Author(s):  
Kaiming Zhang ◽  
Grigore D. Pintilie ◽  
Shanshan Li ◽  
Michael F. Schmid ◽  
Wah Chiu

Author(s):  
Joachim Frank

Compared with images of negatively stained single particle specimens, those obtained by cryo-electron microscopy have the following new features: (a) higher “signal” variability due to a higher variability of particle orientation; (b) reduced signal/noise ratio (S/N); (c) virtual absence of low-spatial-frequency information related to elastic scattering, due to the properties of the phase contrast transfer function (PCTF); and (d) reduced resolution due to the efforts of the microscopist to boost the PCTF at low spatial frequencies, in his attempt to obtain recognizable particle images.


Author(s):  
Marc J.C. de Jong ◽  
Wim M. Busing ◽  
Max T. Otten

Biological materials damage rapidly in the electron beam, limiting the amount of information that can be obtained in the transmission electron microscope. The discovery that observation at cryo temperatures strongly reduces beam damage (in addition to making it unnecessaiy to use chemical fixatives, dehydration agents and stains, which introduce artefacts) has given an important step forward to preserving the ‘live’ situation and makes it possible to study the relation between function, chemical composition and morphology.Among the many cryo-applications, the most challenging is perhaps the determination of the atomic structure. Henderson and co-workers were able to determine the structure of the purple membrane by electron crystallography, providing an understanding of the membrane's working as a proton pump. As far as understood at present, the main stumbling block in achieving high resolution appears to be a random movement of atoms or molecules in the specimen within a fraction of a second after exposure to the electron beam, which destroys the highest-resolution detail sought.


Author(s):  
John M. Murray ◽  
Rob Ward

The eukaryotic flagellum is constructed from 11 parallel tubular elements arranged as 9 peripheral fibers (doublet microtubules) and 2 central fibers (singlet microtubules). The primary motion generating component has been found to be arranged as axially periodic “arms” bridging the adjacent doublets. The dynein, comprising the arms, has been isolated and characterized from several different cilia and flagella. Various radial and azimuthal cross-links stabilize the axially aligned microtubules, and probably play some role in controlling the form of the flagella beat cycle.


Author(s):  
John Trinickt ◽  
Howard White

The primary force of muscle contraction is thought to involve a change in the myosin head whilst attached to actin, the energy coming from ATP hydrolysis. This change in attached state could either be a conformational change in the head or an alteration in the binding angle made with actin. A considerable amount is known about one bound state, the so-called strongly attached state, which occurs in the presence of ADP or in the absence of nucleotide. In this state, which probably corresponds to the last attached state of the force-producing cycle, the angle between the long axis myosin head and the actin filament is roughly 45°. Details of other attached states before and during power production have been difficult to obtain because, even at very high protein concentration, the complex is almost completely dissociated by ATP. Electron micrographs of the complex in the presence of ATP have therefore been obtained only after chemically cross-linking myosin subfragment-1 (S1) to actin filaments to prevent dissociation. But it is unclear then whether the variability in attachment angle observed is due merely to the cross-link acting as a hinge.We have recently found low ionic-strength conditions under which, without resorting to cross-linking, a high fraction of S1 is bound to actin during steady state ATP hydrolysis. The structure of this complex is being studied by cryo-electron microscopy of hydrated specimens. Most advantages of frozen specimens over ambient temperature methods such as negative staining have already been documented. These include improved preservation and fixation rates and the ability to observe protein directly rather than a surrounding stain envelope. In the present experiments, hydrated specimens have the additional benefit that it is feasible to use protein concentrations roughly two orders of magnitude higher than in conventional specimens, thereby reducing dissociation of weakly bound complexes.


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