scholarly journals Comparing Transient Oligonucleotide Hybridization Kinetics Using DNA-PAINT and Optoplasmonic Single-Molecule Sensing on Gold Nanorods

ACS Photonics ◽  
2021 ◽  
Author(s):  
Narima Eerqing ◽  
Sivaraman Subramanian ◽  
Jesús Rubio ◽  
Tobias Lutz ◽  
Hsin-Yu Wu ◽  
...  
2017 ◽  
Vol 2 (1) ◽  
Author(s):  
Christian Korfhage ◽  
Evelyn Fricke ◽  
Andreas Meier ◽  
Andreas Geipel ◽  
Mark Baltes ◽  
...  

Abstract Generation of monoclonal DNA clusters on a surface is a useful method for digital nucleic acid detection applications (e.g. microarray or next-generation sequencing). To obtain sufficient copies per cluster for digital detection, the single molecule bound to the surface must be amplified. Here we describe ClonalRCA, a rolling-circle amplification (RCA) method for the generation of monoclonal DNA clusters based on forward and reverse primers immobilized on the surface. No primer in the reaction buffer is needed. Clusters formed by ClonalRCA comprise forward and reverse strands in multiple copies tethered to the surface within a cluster of micrometer size. Single stranded circular molecules are used as a target to create a cluster with about 10 000 forward and reverse strands. The DNA strands are available for oligonucleotide hybridization, primer extension and sequencing.


2014 ◽  
Vol 106 (2) ◽  
pp. 196a
Author(s):  
Sara Carozza ◽  
John Van Noort

2019 ◽  
Vol 55 (53) ◽  
pp. 7707-7710 ◽  
Author(s):  
Raheleh Pardehkhorram ◽  
Simone Bonaccorsi ◽  
Huihui Zhu ◽  
Vinicius R. Gonçales ◽  
Yanfang Wu ◽  
...  

Well-defined second-generation hot spots in end-to-end assembled gold nanobipyramids exhibit sufficient enhancement of the plasmonic field for single molecule detection.


2005 ◽  
Vol 16 (9) ◽  
pp. 1776-1780 ◽  
Author(s):  
Bifeng Pan ◽  
Limei Ao ◽  
Feng Gao ◽  
Hongye Tian ◽  
Rong He ◽  
...  

2020 ◽  
Author(s):  
Viktoria Wedler ◽  
Fabian Strauß ◽  
Swathi Sudhakar ◽  
Gero Lutz Hermsdorf ◽  
York-Dieter Stierhof ◽  
...  

AbstractGold nanoparticles are intriguing because of their unique size- and shape-dependent chemical, electronic and optical properties. Various microscopy and biomedical applications are based on the particles’ biocompatibility, surface functionalizability, light absorption, and plasmon resonances. Gold nanorods (AuNRs) are particularly promising for various sensor applications due to their tip-enhanced plasmonic fields. For biomolecule attachment, AuNRs are often stabilized with amphiphilic molecules and functionalized with antibodies or biotin-binding proteins. However, by their intrinsic size such molecules block the most sensitive near-field region of the AuNRs. Here, we used short cationic thiols to covalently functionalize the gold surface. We show that the functionalization layer is thin and that these polycationic AuNRs bind in vitro to negatively charged microtubule filaments. Furthermore, we can plasmonically stimulate light emission from the AuNRs and, therefore, use them as bleach- and blinkfree microtubule markers. We confirmed colocalization by transmission electron microscopy or the combination of interference reflection and single-molecule fluorescence microscopy of fluorescently-labeled or plasmonic photoluminescent versions of the AuNRs. We expect that polycationic AuNRs may be applicable to in vivo systems and other negatively charged molecules like DNA. In the long-term, microtubule-bound AuNRs can be used as ultrasensitive single-molecule sensors for molecular machines that interact with microtubules.


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