Considerations in Compound Database Preparation“Hidden” Impact on Virtual Screening Results

2005 ◽  
Vol 45 (6) ◽  
pp. 1908-1919 ◽  
Author(s):  
Andrew J. S. Knox ◽  
Mary J. Meegan ◽  
Giorgio Carta ◽  
David G. Lloyd
2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Thomas Sommer ◽  
Harald Hübner ◽  
Ahmed El Kerdawy ◽  
Peter Gmeiner ◽  
Monika Pischetsrieder ◽  
...  

Author(s):  
Jared A. Miles ◽  
Jia Hui Ng ◽  
B. Yogi Sreenivas ◽  
Charlotte Courageux ◽  
Alexandre Igert ◽  
...  

2016 ◽  
Vol Volume 10 ◽  
pp. 4091-4100 ◽  
Author(s):  
Jing Wang ◽  
Chunxia Qiao ◽  
He Xiao ◽  
Zhou Lin ◽  
Yan Li ◽  
...  

2020 ◽  
Author(s):  
Eleonora Diamanti ◽  
Inda Setyawati ◽  
Spyridon Bousis ◽  
leticia mojas ◽  
lotteke Swier ◽  
...  

Here, we report on the virtual screening, design, synthesis and structure–activity relationships (SARs) of the first class of selective, antibacterial agents against the energy-coupling factor (ECF) transporters. The ECF transporters are a family of transmembrane proteins involved in the uptake of vitamins in a wide range of bacteria. Inhibition of the activity of these proteins could reduce the viability of pathogens that depend on vitamin uptake. Because of their central role in the metabolism of bacteria and their absence in humans, ECF transporters are novel potential antimicrobial targets to tackle infection. The hit compound’s metabolic and plasma stability, the potency (20, MIC Streptococcus pneumoniae = 2 µg/mL), the absence of cytotoxicity and a lack of resistance development under the conditions tested here suggest that this scaffold may represent a promising starting point for the development of novel antimicrobial agents with an unprecedented mechanism of action.<br>


2020 ◽  
Author(s):  
Mohammad Seyedhamzeh ◽  
Bahareh Farasati Far ◽  
Mehdi Shafiee Ardestani ◽  
Shahrzad Javanshir ◽  
Fatemeh Aliabadi ◽  
...  

Studies of coronavirus disease 2019 (COVID-19) as a current global health problem shown the initial plasma levels of most pro-inflammatory cytokines increased during the infection, which leads to patient countless complications. Previous studies also demonstrated that the metronidazole (MTZ) administration reduced related cytokines and improved treatment in patients. However, the effect of this drug on cytokines has not been determined. In the present study, the interaction of MTZ with cytokines was investigated using molecular docking as one of the principal methods in drug discovery and design. According to the obtained results, the IL12-metronidazole complex is more stable than other cytokines, and an increase in the surface and volume leads to prevent to bind to receptors. Moreover, ligand-based virtual screening of several libraries showed metronidazole phosphate, metronidazole benzoate, 1-[1-(2-Hydroxyethyl)-5- nitroimidazol-2-yl]-N-methylmethanimine oxide, acyclovir, and tetrahydrobiopterin (THB or BH4) like MTZ by changing the surface and volume prevents binding IL-12 to the receptor. Finally, the inhibition of the active sites of IL-12 occurred by modifying the position of the methyl and hydroxyl functional groups in MTZ. <br>


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