Nanotribology of Octadecyltrichlorosilane Monolayers and Silicon:  Self-Mated versus Unmated Interfaces and Local Packing Density Effects

Langmuir ◽  
2007 ◽  
Vol 23 (18) ◽  
pp. 9242-9252 ◽  
Author(s):  
Erin E. Flater ◽  
W. Robert Ashurst ◽  
Robert W. Carpick

Langmuir ◽  
2017 ◽  
Vol 33 (8) ◽  
pp. 2050-2058 ◽  
Author(s):  
Norman Leo ◽  
Juan Liu ◽  
Ian Archbold ◽  
Yongan Tang ◽  
Xiangqun Zeng


2013 ◽  
Vol 23 (31) ◽  
pp. 3916-3924 ◽  
Author(s):  
Luis Cerdán ◽  
Angel Costela ◽  
Eduardo Enciso ◽  
Inmaculada García-Moreno


2001 ◽  
Vol 123 (28) ◽  
pp. 6873-6881 ◽  
Author(s):  
Paul T. Mikulski ◽  
Judith A. Harrison


2014 ◽  
Vol 2014 ◽  
pp. 1-10 ◽  
Author(s):  
So-Wei Yeh ◽  
Tsun-Tsao Huang ◽  
Jen-Wei Liu ◽  
Sung-Huan Yu ◽  
Chien-Hua Shih ◽  
...  

Functional and biophysical constraints result in site-dependent patterns of protein sequence variability. It is commonly assumed that the key structural determinant of site-specific rates of evolution is the Relative Solvent Accessibility (RSA). However, a recent study found that amino acid substitution rates correlate better with two Local Packing Density (LPD) measures, the Weighted Contact Number (WCN) and the Contact Number (CN), than with RSA. This work aims at a more thorough assessment. To this end, in addition to substitution rates, we considered four other sequence variability scores, four measures of solvent accessibility (SA), and other CN measures. We compared all properties for each protein of a structurally and functionally diverse representative dataset of monomeric enzymes. We show that the best sequence variability measures take into account phylogenetic tree topology. More importantly, we show that both LPD measures (WCN and CN) correlate better than all of the SA measures, regardless of the sequence variability score used. Moreover, the independent contribution of the best LPD measure is approximately four times larger than that of the best SA measure. This study strongly supports the conclusion that a site’s packing density rather than its solvent accessibility is the main structural determinant of its rate of evolution.



1978 ◽  
Vol 20 (2) ◽  
pp. 257-260 ◽  
Author(s):  
Keishi Gotoh ◽  
W.S. Jodrey ◽  
E.M. Tory


PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0250076
Author(s):  
Jianbo Wang ◽  
Tiansheng Hong ◽  
Zhen Li ◽  
Xiuyun Xue ◽  
Shilei Lyu

For the requirement in container nursery culture that growing media should be achieved the appropriate degree compaction, this paper presents an experiment on the compaction dynamics of air-dried soil under repetitive drop shocks, as a preliminary step toward the mechanization of this compaction method. The drop height used to adjust the shock intensity included 2 mm, 4 mm, 5 mm and 6 mm. And the overall packing density of soil in a vertically stratified cylinder vessel and the local packing density in each layer were taken as indicators of soil compaction states. The stretched exponential function derived from KWW law than the empirical inverse-logarithmic function has been found to be more suitable for expressing the temporal evolution of soil compaction, according to the results of curve-fitting to test values of the overall and local density. It is inherent in this experimental configuration that the drop shock intensity even at a constant drop height varies with drop times, owing to the interaction between the soil packing itself and drop shocks caused by the combination of the packing and the container. But the function t/τf(t,H) is manifested as a straight line on the drop times t with the line slope related to the drop height H, so the soil compaction dynamics caused by its drop shocks and that under the condition with actively controlled intensity actually share the common relaxation law. In addition, the soil’s one-dimensional distribution of local packing density showed a slight positive gradient as similar as monodisperse particles did.





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