Isolation and Hybridization Kinetics of Messenger RNA from Dictyostelium discoideum

1972 ◽  
Vol 239 (95) ◽  
pp. 225-228 ◽  
Author(s):  
RICHARD A. FIRTEL ◽  
ALLAN JACOBSON ◽  
HARVEY F. LODISH
Keyword(s):  
Dictyostelium Discoideum ◽  
Messenger Rna ◽  
Kinetics Of

scholarly journals Determinants of mRNA stability in Dictyostelium discoideum amoebae: differences in poly(A) tail length, ribosome loading, and mRNA size cannot account for the heterogeneity of mRNA decay rates.

1988 ◽  
Vol 8 (5) ◽  
pp. 1957-1969 ◽  
Author(s):  
R A Shapiro ◽  
D Herrick ◽  
R E Manrow ◽  
D Blinder ◽  
A Jacobson
Keyword(s):  
Steady State ◽  
Dictyostelium Discoideum ◽  
Mrna Decay ◽  
Decay Rates ◽  
Time Dependent ◽  
Translational Efficiency ◽  
Cdna Clones ◽  
Dependent Manner ◽  
Significant Difference ◽  
Kinetics Of

As an approach to understanding the structures and mechanisms which determine mRNA decay rates, we have cloned and begun to characterize cDNAs which encode mRNAs representative of the stability extremes in the poly(A)+ RNA population of Dictyostelium discoideum amoebae. The cDNA clones were identified in a screening procedure which was based on the occurrence of poly(A) shortening during mRNA aging. mRNA half-lives were determined by hybridization of poly(A)+ RNA, isolated from cells labeled in a 32PO4 pulse-chase, to dots of excess cloned DNA. Individual mRNAs decayed with unique first-order decay rates ranging from 0.9 to 9.6 h, indicating that the complex decay kinetics of total poly(A)+ RNA in D. discoideum amoebae reflect the sum of the decay rates of individual mRNAs. Using specific probes derived from these cDNA clones, we have compared the sizes, extents of ribosome loading, and poly(A) tail lengths of stable, moderately stable, and unstable mRNAs. We found (i) no correlation between mRNA size and decay rate; (ii) no significant difference in the number of ribosomes per unit length of stable versus unstable mRNAs, and (iii) a general inverse relationship between mRNA decay rates and poly(A) tail lengths. Collectively, these observations indicate that mRNA decay in D. discoideum amoebae cannot be explained in terms of random nucleolytic events. The possibility that specific 3'-structural determinants can confer mRNA instability is suggested by a comparison of the labeling and turnover kinetics of different actin mRNAs. A correlation was observed between the steady-state percentage of a given mRNA found in polysomes and its degree of instability; i.e., unstable mRNAs were more efficiently recruited into polysomes than stable mRNAs. Since stable mRNAs are, on average, "older" than unstable mRNAs, this correlation may reflect a translational role for mRNA modifications that change in a time-dependent manner. Our previous studies have demonstrated both a time-dependent shortening and a possible translational role for the 3' poly(A) tracts of mRNA. We suggest, therefore, that the observed differences in the translational efficiency of stable and unstable mRNAs may, in part, be attributable to differences in steady-state poly(A) tail lengths.

Kinetics of DNA and histone messenger RNA synthesis in CV-1 monkey kidney cells infected with simian virus 40

1976 ◽  
Vol 105 (2) ◽  
pp. 263-273 ◽  
Author(s):  
Piero Liberti ◽  
Lia Fischer-Fantuzzi ◽  
Cesare Vesco
Keyword(s):  
Messenger Rna ◽  
Rna Synthesis ◽  
Simian Virus 40 ◽  
Simian Virus ◽  
Monkey Kidney ◽  
Kidney Cells ◽  
Kinetics Of

scholarly journals Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics

2020 ◽  
Vol 48 (12) ◽  
pp. 6699-6714 ◽  
Author(s):  
Alexey A Gavrilov ◽  
Anastasiya A Zharikova ◽  
Aleksandra A Galitsyna ◽  
Artem V Luzhin ◽  
Natalia M Rubanova ◽  
...  
Keyword(s):  
Messenger Rna ◽  
Noncoding Rnas ◽  
K562 Cells ◽  
Biological Processes ◽  
Intron Splicing ◽  
Rna Molecules ◽  
Proximity Ligation ◽  
Data Support ◽  
Non Coding Rnas ◽  
Kinetics Of

Abstract Non-coding RNAs (ncRNAs) participate in various biological processes, including regulating transcription and sustaining genome 3D organization. Here, we present a method termed Red-C that exploits proximity ligation to identify contacts with the genome for all RNA molecules present in the nucleus. Using Red-C, we uncovered the RNA–DNA interactome of human K562 cells and identified hundreds of ncRNAs enriched in active or repressed chromatin, including previously undescribed RNAs. Analysis of the RNA–DNA interactome also allowed us to trace the kinetics of messenger RNA production. Our data support the model of co-transcriptional intron splicing, but not the hypothesis of the circularization of actively transcribed genes.

The kinetics of the translation of messenger RNA into protein

1967 ◽  
Vol 17 (1) ◽  
pp. 19-30 ◽  
Author(s):  
Michael D. Garrick
Keyword(s):  
Messenger Rna ◽  
Kinetics Of

Calcium uptake and gp80 messenger RNA destabilization follows cAMP receptor down regulation in Dictyostelium discoideum

1994 ◽  
Vol 6 (8) ◽  
pp. 883-895 ◽  
Author(s):  
Gláucia Mendes Souza ◽  
Claudette Klein ◽  
JoséCarlos Da Costa Maia ◽  
Aline Maria Da Silva
Keyword(s):  
Dictyostelium Discoideum ◽  
Messenger Rna ◽  
Calcium Uptake ◽  
Down Regulation ◽  
Camp Receptor

Differentiation of Dictyostelium discoideum mutant cells in a shaken suspension culture and the effect of cyclic AMP

1981 ◽  
Vol 51 (1) ◽  
pp. 131-142
Author(s):  
K. Abe ◽  
Y. Saga ◽  
H. Okada ◽  
K. Yanagisawa
Keyword(s):  
Cyclic Amp ◽  
Suspension Culture ◽  
Dictyostelium Discoideum ◽  
Solid Surface ◽  
Enzyme Activities ◽  
Parental Strain ◽  
Mutant Cell ◽  
Specific Activities ◽  
Mutant Cells ◽  
Kinetics Of

In Dictyostelium discoideum, 16 mutants in which cells differentiate into spores and stalk cells without normal morphogenesis were isolated. All these mutants are rapidly developing and capable of differentiating in a shaken suspension of phosphate buffer.The developmental kinetics of specific activities of enzymes in one of the mutants, HTY 1851, cultured in the suspension was compared with that in the parental strain, X2, developed on a solid surface. Most of the enzyme activities appeared much earlier and the peaks of the activities were lower in HTY1851 than X2, but the order or appearance of the activities was the same in both the strains cultured under the conditions described above. These results suggest that the biochemical steps in the development of the mutant in a shaken suspension are essentially the same as those of the parental strain X2 on a solid surface. It was also found that addition of cyclic AMP (2.5 X 10-5 M to 1 X 10-4 M) to the mutant cell suspension 6–8 h after the initiation of development induced an increase in the number of spores and the specific activities of some enzymes to values twice as high as those of an untreated control.

Changes in the polyadenylated messenger RNA population during development of Dictyostelium discoideum

1981 ◽  
Vol 81 (1) ◽  
pp. 155-166 ◽  
Author(s):  
Michel Jacquet ◽  
Dominique Part ◽  
Béatrice Felenbok
Keyword(s):  
Dictyostelium Discoideum ◽  
Messenger Rna
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