Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

2014 ◽  
Vol 46 (7) ◽  
pp. 714-721 ◽  
Author(s):  
Wei Chen ◽  
Yanqiang Gao ◽  
Weibo Xie ◽  
Liang Gong ◽  
Kai Lu ◽  
...  
Keyword(s):  
Natural Variation ◽  
Genome Wide Association ◽  
Association Analyses ◽  
Genome Wide

scholarly journals Genome-wide association analyses reveal complex genetic architecture underlying natural variation for flowering time in canola

2016 ◽  
Vol 39 (6) ◽  
pp. 1228-1239 ◽  
Author(s):  
H. Raman ◽  
R. Raman ◽  
N. Coombes ◽  
J. Song ◽  
R. Prangnell ◽  
...  
Keyword(s):  
Flowering Time ◽  
Genetic Architecture ◽  
Natural Variation ◽  
Genome Wide Association ◽  
Association Analyses ◽  
Genome Wide

scholarly journals Genome-Wide Association Study of Natural Variation in Arabidopsis Exposed to Acid Mine Drainage Toxicity and Validation of Associated Genes with Reverse Genetics

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 191
Author(s):  
Bandana Ghimire ◽  
Thangasamy Saminathan ◽  
Abiodun Bodunrin ◽  
Venkata Lakshmi Abburi ◽  
Arjun Ojha Kshetry ◽  
...  
Keyword(s):  
Acid Mine Drainage ◽  
Association Study ◽  
Root Length ◽  
Natural Variation ◽  
Genome Wide Association Study ◽  
Mine Drainage ◽  
The United States ◽  
Genome Wide Association ◽  
Acid Mine ◽  
Genome Wide

Acid mine drainage (AMD) is a huge environmental problem in mountain-top mining regions worldwide, including the Appalachian Mountains in the United States. This study applied a genome-wide association study (GWAS) to uncover genomic loci in Arabidopsis associated with tolerance to AMD toxicity. We characterized five major root phenotypes—cumulative root length, average root diameter, root surface area, root volume, and primary root length—in 180 Arabidopsis accessions in response to AMD-supplemented growth medium. GWAS of natural variation in the panel revealed genes associated with tolerance to an acidic environment. Most of these genes were transcription factors, anion/cation transporters, metal transporters, and unknown proteins. Two T-DNA insertion mutants, At1g63005 (miR399b) and At2g05635 (DEAD helicase RAD3), showed enhanced acidity tolerance. Our GWAS and the reverse genetic approach revealed genes involved in conferring tolerance to coal AMD. Our results indicated that proton resistance in hydroponic conditions could be an important index to improve plant growth in acidic soil, at least in acid-sensitive plant species.

scholarly journals 250 Genome wide Association analyses for meat quality traits in multibreed and crossbred beef cattle.

2018 ◽  
Vol 96 (suppl_3) ◽  
pp. 84-84
Author(s):  
M Abo-Ismail ◽  
J Crowley ◽  
E Akanno ◽  
C Li ◽  
P Stothard ◽  
...  
Keyword(s):  
Beef Cattle ◽  
Meat Quality ◽  
Genome Wide Association ◽  
Quality Traits ◽  
Association Analyses ◽  
Meat Quality Traits ◽  
Genome Wide

scholarly journals Genome-wide association analyses of post-traumatic stress disorder and its symptom subdomains in the Million Veteran Program

2021 ◽  
Vol 53 (2) ◽  
pp. 174-184
Author(s):  
Murray B. Stein ◽  
◽  
Daniel F. Levey ◽  
Zhongshan Cheng ◽  
Frank R. Wendt ◽  
...  
Keyword(s):  
Post Traumatic Stress Disorder ◽  
Traumatic Stress ◽  
Stress Disorder ◽  
Genome Wide Association ◽  
Post Traumatic Stress ◽  
Association Analyses ◽  
Genome Wide ◽  
Post Traumatic

scholarly journals Genome-wide association analyses in east Asians identify new susceptibility loci for colorectal cancer

2012 ◽  
Vol 45 (2) ◽  
pp. 191-196 ◽  
Author(s):  
Wei-Hua Jia ◽  
◽  
Ben Zhang ◽  
Keitaro Matsuo ◽  
Aesun Shin ◽  
...  
Keyword(s):  
Colorectal Cancer ◽  
Genome Wide Association ◽  
Susceptibility Loci ◽  
East Asians ◽  
Association Analyses ◽  
Genome Wide

scholarly journals Candidate Variants for Additive and Interactive Effects on Bioenergy Traits in Switchgrass ( Panicum virgatum L.) Identified by Genome‐Wide Association Analyses

2018 ◽  
Vol 11 (3) ◽  
pp. 180002 ◽  
Author(s):  
Guillaume P. Ramstein ◽  
Joseph Evans ◽  
Aruna Nandety ◽  
Malay C. Saha ◽  
E. Charles Brummer ◽  
...  
Keyword(s):  
Panicum Virgatum ◽  
Interactive Effects ◽  
Genome Wide Association ◽  
Association Analyses ◽  
Genome Wide ◽  
Panicum Virgatum L
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