scholarly journals The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

2011 ◽  
Vol 43 (5) ◽  
pp. 476-481 ◽  
Author(s):  
Tina T Hu ◽  
Pedro Pattyn ◽  
Erica G Bakker ◽  
Jun Cao ◽  
Jan-Fang Cheng ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Size Change ◽  
Arabidopsis Lyrata

scholarly journals First Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Isolated from the Chicken Meat in Russia

Proceedings ◽  
2020 ◽  
Vol 76 (1) ◽  
pp. 2
Author(s):  
Alexey V. Rakov ◽  
Anatoly A. Yakovlev ◽  
Viacheslav V. Sinkov
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Salmonella Enteritidis ◽  
Reference Strain ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Gallus Domesticus ◽  
Gallus Gallus Domesticus ◽  
Zoonotic Pathogens

Salmonella enterica subsp. enterica serovar Enteritidis is one of the most common zoonotic pathogens. We report here the genome sequence of Salmonella enterica subsp. enterica serovar Enteritidis S-25048 isolated from chicken (Gallus gallus domesticus) meat in Artyom, Russia. The assembled genome size was 4,695,145 bp. A total of 4565 coding genes, four rRNAs, 62 tRNAs, and 14 noncoding RNAs were predicted. To our knowledge, this is the first publically deposited annotated genome of this serovar isolated in Russia. The Salmonella Enteritidis S-25048 genome is suitable for use as a reference strain of Salmonella Enteritidis isolated in Russia.

scholarly journals Genome Sequence of Clostridium botulinum Strain Adk2012 Associated with a Foodborne Botulinum Case in Tottori, Japan, in 2012

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Hiroshi Asakura ◽  
Shiori Yamamoto ◽  
Yoshika Momose ◽  
Haru Kato ◽  
Masaaki Iwaki ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Clostridium Botulinum ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Foodborne Botulism

ABSTRACT We report here a draft genome sequence of Clostridium botulinum Adk2012 responsible for a foodborne botulism case that occurred in Tottori, Japan, in 2012. Its genome size was 2,904,173 bp, with 46 rRNAs and 54 tRNAs, at a coverage of 14.5×.

scholarly journals Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Jameela Almasoud ◽  
Laoise McArdle ◽  
Ryan Henne ◽  
Karen Mathews ◽  
Ísla O’Connor ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Red Yeast

Symmetrospora coprosmae is a red yeast from the subphylum Pucciniomycotina in the phylum Basidiomycota. Here, we present the first genome sequence of S. coprosmae strain UCD350, from an isolate collected from soil in Ireland. The genome size is 20.2 Mb.

scholarly journals Genome Sequence of Microbacterium sp. Strain TPU 3598, a Lumichrome Producer

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Kazunori Yamamoto ◽  
Yasuhisa Asano
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences

ABSTRACT We report here the genome sequence of Microbacterium sp. strain TPU 3598, previously described as a producer of lumichrome. The sequenced genome size is 3,787,270 bp, the average G+C content is 68.39%, and 3,674 protein-coding sequences are predicted.

scholarly journals Draft Genome Sequence of Lactobacillus sakei Strain FBL1, a Probiotic Bacterium Isolated from Mukeunji , a Long-Fermented Kimchi, in South Korea

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jae-Hwan Kim ◽  
Eiseul Kim ◽  
Chang-Gyeom Kim ◽  
Dong-Won Choo ◽  
Hae-Yeong Kim
Keyword(s):  
South Korea ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Draft Genome Sequence ◽  
Lactobacillus Sakei

This report describes the 2,032,158-bp draft genome sequence of Lactobacillus sakei ( L. sakei ) strain FBL1, isolated from mukeunji purchased at the Gwangju World Kimchi Culture Festival in 2012, South Korea. The total draft genome size was 2,032,158 bp with a G+C content of 41.2%.

scholarly journals Whole-Genome Sequence of a Pantoea sp. Strain Isolated from an Olive (Olea europaea L.) Knot

2019 ◽  
Vol 8 (42) ◽  
Author(s):  
Gabriela Vuletin Selak ◽  
Marina Raboteg ◽  
Audrey Dubost ◽  
Danis Abrouk ◽  
Katja Žanić ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Sequence Data ◽  
Whole Genome Sequence ◽  
Trna Genes ◽  
Whole Genome ◽  
Ribosomal Operon ◽  
Adriatic Coast ◽  
Olive Trees

Here, we present the total genome sequence of Pantoea sp. strain paga, a plant-associated bacterium isolated from knots present on olive trees grown on the Adriatic Coast. The genome size of Pantoea sp. paga is 5.08 Mb, with a G+C content of 54%. The genome contains 4,776 predicted coding DNA sequences (CDSs), including 70 tRNA genes and 1 ribosomal operon. Obtained genome sequence data will provide insight on the physiology, ecology, and evolution of Pantoea spp.

scholarly journals Draft Genome Sequence of Filamentous Fungus Phialemoniopsis curvata, Isolated from Diesel Fuel

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Vanessa A. Varaljay ◽  
Wanda J. Lyon ◽  
Audra L. Crouch ◽  
Carrie A. Drake ◽  
Jeffrey M. Hollomon ◽  
...  
Keyword(s):  
Fatty Acid ◽  
Genome Size ◽  
Genome Sequence ◽  
Diesel Fuel ◽  
Filamentous Fungus ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Beta Oxidation ◽  
Content Type

Phialemoniopsis curvata D216 is a filamentous fungus isolated from contaminated diesel fuel. The genome size is 40.3 Mbp with a G+C content of 54.81%. Its genome encodes enzymes and pathways likely involved in the degradation of and survival in fuel, including lipases, fatty acid transporters, and beta oxidation.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Draft Genome Sequence of Desulfovibrio BerOc1, a Mercury-Methylating Strain

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Marisol Goñi Urriza ◽  
Claire Gassie ◽  
Oliver Bouchez ◽  
Christophe Klopp ◽  
Rémy Guyoneaud
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Mediterranean Coast ◽  
Draft Genome Sequence ◽  
Mercury Methylation ◽  
Sulfate Reducing

ABSTRACT Desulfovibrio BerOc1 is a sulfate-reducing bacterium isolated from the Berre lagoon (French Mediterranean coast). BerOc1 is able to methylate and demethylate mercury. The genome size is 4,081,579 bp assembled into five contigs. We identified the hgcA and hgcB genes involved in mercury methylation, but not those responsible for mercury demethylation.

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